Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24732 LG6 11000082 11001508 PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to iron ion, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of iron ion transport, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein dimerization activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
C/T 11000516 downstream_gene_variant
G/A 11000686 synonymous_variant p.Ala191Ala
A/G 11000787 downstream_gene_variant
T/G 11000911 downstream_gene_variant
T/C 11000982 downstream_gene_variant
A/G 11001110 synonymous_variant p.Asn133Asn
G/A 11001124 missense_variant p.Pro129Ser
T/C 11001173 synonymous_variant p.Gly112Gly
G/A 11001308 synonymous_variant p.Asp67Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24732.1
MDAIHQDTQAYINDFELYDFVDNPNFDQFINLIRGENEDANCDFGSDLITDCFVNNQLLPCPANPFDQNYNNAVNVYDQSSTFSSFSCFDGEMKGEGEGEREEEEEEEEHDGEHSSETTTTTKNDDSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVRENYQESINNSKNVQAAWNSHPIFKKIMQVEIVQVEERGYYAKIVCNKGEGVAASLFRALESLAGFSVQNSNLATVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG*


CDS Sequence:
>Vu_24732.1
ATGGATGCAATTCATCAAGACACACAGGCGTACATCAATGATTTTGAGCTGTACGACTTCGTGGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCTAACTGTGACTTCGGTTCTGACCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGCAAACCCTTTTGACCAGAACTATAACAATGCTGTGAATGTCTATGATCAGAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGGAGATGAAGGGAGAAGGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGAAGAAGAACACGATGGAGAGCATTCTTCTGAAACAACAACAACCACCAAGAATGACGATTCCAAACCCAAACTGAAAAATGACAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCCGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGCGTGAAAACTATCAAGAATCAATTAACAATTCCAAAAATGTGCAAGCTGCTTGGAATAGTCATCCAATCTTCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGTTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGGTCTGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTTGTGGCATCCTTTTCTGGTTGA


Promoter Sequence:
>Vu_24732::LG6:11001508-11003508(-)
CTACCATAAAATAGAACTAAATAAGGCATCAAAACCGTCGTCAATGATGTCAGTTTAGATTCTCCTTCTGAAAAAAGAAAGGGTCAGAGGATCCAAAACTTCAATCATCTGATCAAGGTCAATGGGAGCAACATGTGTCTACTTGGTACAGTTATATATTTACTCTCGCTTTTTGACAGTTACATATGCAGTTCATATCTGCATGTTTTTTCTTTCTGTAACAAGTCAATAGTTAAAAAAAATTAAAATAATTTATCAATCATTGGCTAATTAAGCTAACATGCATGACTTATATAGACACGTTAATATTTGCATTAATTGGGGCAACCAAAAAGTTTTTTTTTTTTTTTCCGATTGAAATTCCTTATTCAAATAACTTAAAATTGTCTTGAAGATCGGATGGACTCTTTGGTAGTCATTCATAATCCAAGTTTCATTATTCTCTCTCTTTCTTGTTCAAGCTGTATGAATGGTTGTCTTGAAAATCCGATGGATTCTCTAGTAGTCATTCATCATCCGAGTTTCATTATTCTCTCTCTCCTTTTTGTTCAAGTTGTTGTATGGATGATTACATGTCAAAGACACTCTGACGCAATAATATAACCAATAGGTTAGCACAAGTTATATGTGCATAATGATCCTAAAGTCATACATGAGATCTTTATTTATAATAATTGTGATGAATTTTTATCTTTTGCTGGCTTAATCACAACTCAATTGCATTTTAATCTAGATTAGAAGCTTAATGAGTCATTACTACATATTAAGTACACTGAACACGACCTAAACTTGAGTGAACGGTTCGGATGGACGAGAAAACGGCCTGGATAGAAAATCTGAATACACTTTGATTAAAAAAGATTTTCTATATACACTGGTAGTACATAGTTCTTTTTTACTCATAGCACAGAAACTGTGGATTCCTTTTTATCAAATATTTGATATTTTTTTATAAAATAGGGAGTATTACTGTGGTGCAAAGTTTGACGGCTGTTATGATTGTGAAATCACTAACTTGCATCCACAGCACCTTCCATTTGCTTTATGAAATTTAAAATATGTGAGACACGTCATCATGTTCCCAGTAGATTCTGTTCACATTATAGCAGTTGTTCATCTGCATTTATTTATCCCGAAAATGTTGCAGTACTCAGCATAGAAAGTGACCCTTTTGTGATAATGATCTTGACAACAATACTGGCTTCAACTTCAATCAATATAAAAGTCGAGAAATGCTCATTACCCATATACAACCTCATCTAAAGCAGCATAAAATAGTGCTATTATTACCCATATTGATATGAAAATGACCAGCTTTATTTAAAATTGCTTCTGGAAAAAGGCTACTTAACACAGTTTAAAACTTTTACTTGAACACAGTTTTCTCAAAACTGCTTCTGCATTATTCTTGCTGTTGCCAGTTGTAATCATTCATCAGAATATATATATATATATGTGTGTGCAACAGTTGAAAAGTTTAGAGCGGCTGCAACTAGATTGATTTCGATTTATATATGCTTAAAATAAAATAAAAACATAATTAAAATGACAATTCATTTGTCTCGGAGTTGAATTTATGTTATATATAAACAGCCAAAGAAACTTACGGGTTGGATTTGATGCAAAGAGCTGCATTTTACAACGTAAACAACTAAAGTTCAAATATTCACTACAATATATGTTAAGTGTGAGATATGAGAGTAAAATAGTTTCTGAAAGAAAATACATGCAAGTAGCAACAAAAAACTATCTAGTGTACAAGCAGGTTTCATCTTTTGGTCCTTTGACAGATACTAACCAAATAATCAGAGAAAAAAAAATGAAAGGCGTCTCTACCTGAGTTAATTAACAATGGTGCAAATAAAATAATAGACCTTGGTGACATGAAAGGAAACTCTTGTTATTCCATTCACACCAAAACTATATATTAATAATCATGTCAACCTTCTATATATATTAGGATCAGGCCTCTAACTACCCAAGCTCTAGCTGTGAACGCT


Gene Sequence:
>Vu_24732(-)
ATGGATGCAATTCATCAAGACACACAGGCGTACATCAATGATTTTGAGCTGTACGACTTCGTGGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCTAACTGTGACTTCGGTTCTGACCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGCAAACCCTTTTGACCAGAACTATAACAATGCTGTGAATGTCTATGATCAGAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGGAGATGAAGGGAGAAGGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGAAGAAGAACACGATGGAGAGCATTCTTCTGAAACAACAACAACCACCAAGAATGACGATTCCAAACCCAAACTGAAAAATGACAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGGTACATGAGTAAAACTGTTATTATAAAGTCTAATGTAAGAGGGTTGCTTGAAACTAACGACATATGTTTAATTAAGTTTTGCTTAGAAGAATTTCTCTAAAAACACACGAAGGTAAAATGAATTTTCTTACTTAAACTATTCTTTTACTGTAAGTGTTTGTTTATGTTGAAATTTATCCAAAGTGAGCCTAAAACTAACATGATGTTTATATTTGAGAGTGAAATGTAATTGATATAGCTATGTACGCAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCCGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGCGTGAAAACTATCAAGAATCAATTAACAATTCCAAAAATGTGCAAGCTGCTTGGAATAGTCATCCAATCTTCAAGAAGATCATGCAGGTAGGTTTGATTATAGAAATTCATGATATAGCTCCATAATTTTTCAGTTGGTCTTTCTATGTACATTAATCGCTGCAACATTTTTGAATGCTTGTTTGTAGGTGGAGATTGTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGTTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATGTGAGCTGTTTTCCCTCTCCTTTCCAATTCAATAATTCTGTTTCGTTGAAAGATTGAGTTATTATTTTTGTTCACGGATTAAGTCATTGATGTGTTGAAAACAGATAAAAGGGTCTGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTTGTGGCATCCTTTTCTGGTTGA