Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24753	LG6	11254284	11255594	PREDICTED: lysM domain receptor-like kinase 3	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response to bacterium, response to osmotic stress, negative regulation of macromolecule metabolic process, protein phosphorylation, phosphorylation, response to organonitrogen compound, defense response to bacterium, immune system process, response to water deprivation, protein phosphorylation, defense response to bacterium, response to osmotic stress, phosphorylation, response to abscisic acid, response to water deprivation, protein phosphorylation, response to water deprivation, response to abscisic acid
Cellular Component	is active in	cellular_component
Molecular Function	enables	ATP binding, protein kinase activity, protein kinase activity, protein kinase activity, ATP binding

SNP	Position	Effect	Amino acid change
A/G	11254323	synonymous_variant	p.Ile424Ile
C/T	11254422	synonymous_variant	p.Glu391Glu
C/T	11254425	synonymous_variant	p.Leu390Leu
A/G	11254515	synonymous_variant	p.Gly360Gly
T/A	11254531	missense_variant	p.Asp355Val
C/T	11254535	missense_variant	p.Val354Ile
C/A	11254548	synonymous_variant	p.Thr349Thr
G/A	11254564	missense_variant	p.Thr344Met
C/G	11254567	missense_variant	p.Arg343Thr
C/T	11254569	synonymous_variant	p.Leu342Leu
A/T	11254571	missense_variant	p.Leu342Met
T/A	11254977	synonymous_variant	p.Arg206Arg
C/T	11254989	synonymous_variant	p.Thr202Thr
G/A	11255418	synonymous_variant	p.Ser59Ser
G/T	11255437	missense_variant	p.Ser53Tyr
A/G	11255523	synonymous_variant	p.Thr24Thr
C/T	11255544	synonymous_variant	p.Pro17Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24753.1

MCKTKMATNASSPTPTPRSQQRSTQSPRTSSPRSTLRPNPGPTTSFSDKPSTSYASTASAPYSGSTGYRLSSDTSIASRTSLTSLRDTLPENPHIYDFSEICAATNNFLAKRHSSSTPCWRCTLRGADVIVFQRKFIRKLQTNELQQLLSVVCRSHHVSIIKLLGASVSGDHIYLVYDFVNGASLSDCLRNKNNPRFTVLSTWMSRMQVATDLAHALDYIHNKTGLNINFVHNRIKSSGIIVTEPSFNARVCHFGTAQLCGEIDLENEQLGEISEIGEKFPPSPARSRQFEGVRGYMAPEFQASGVATQRSDIYAFGVVLLELLSGEEPLKFKYDEKTREFLRTSVIETARGVVDGGDGGVQGKLRKWVDQRLKDSFPVDVAEKLTRVALECVHVDPDKRPNMGQVAGKISKFYLKSRMWSDSIKVPDLTVSLGPR*

CDS Sequence:
>Vu_24753.1

ATGTGCAAGACAAAGATGGCGACCAACGCCTCAAGTCCCACTCCCACACCGCGATCACAACAACGCTCCACTCAAAGCCCAAGAACATCCTCCCCAAGGTCCACACTCAGGCCCAATCCTGGGCCCACCACTTCTTTCTCAGACAAACCCTCCACCTCTTACGCCTCCACCGCCAGCGCTCCCTACAGCGGCTCCACCGGCTACCGTCTCTCCTCCGACACCTCCATTGCCAGCCGCACCTCCCTCACCTCTCTCCGCGACACCCTCCCAGAAAACCCTCACATCTACGACTTCTCCGAAATATGCGCCGCCACCAACAACTTCCTCGCCAAGCGACACTCCTCCTCCACCCCCTGCTGGCGCTGCACTCTCCGCGGAGCAGACGTCATTGTCTTCCAGCGCAAGTTCATCCGCAAACTCCAGACGAATGAGCTCCAGCAACTGCTCTCCGTCGTCTGCCGCAGCCACCACGTCAGCATCATCAAACTCCTCGGTGCCTCCGTCTCCGGCGACCACATCTACCTCGTCTACGACTTCGTCAACGGCGCCAGCCTCTCCGATTGTCTCCGCAACAAGAACAACCCGCGCTTCACCGTTCTCTCCACGTGGATGTCGCGAATGCAGGTCGCCACGGATCTCGCTCACGCACTCGATTACATTCACAACAAAACCGGTTTGAACATCAATTTCGTCCACAACCGTATCAAATCCAGCGGCATCATCGTCACGGAACCTTCTTTCAACGCTAGGGTTTGCCATTTCGGCACCGCGCAGCTCTGCGGCGAAATCGACCTCGAAAACGAACAATTAGGCGAAATCAGTGAGATAGGGGAGAAATTTCCGCCGTCCCCAGCGAGATCCAGGCAATTCGAGGGCGTGCGGGGTTACATGGCGCCGGAATTTCAAGCCTCCGGCGTAGCGACTCAGAGGTCTGATATATACGCTTTCGGAGTGGTGTTGTTGGAGCTCCTCTCCGGGGAGGAGCCACTGAAGTTTAAATATGACGAGAAGACGCGCGAGTTTTTGAGGACGTCGGTGATCGAGACGGCGAGAGGCGTGGTTGACGGCGGCGATGGTGGTGTGCAGGGGAAGCTGAGGAAGTGGGTTGATCAGAGATTGAAAGATTCGTTTCCCGTGGACGTAGCGGAGAAGCTGACACGTGTGGCACTGGAGTGCGTACACGTGGATCCAGATAAGCGACCGAACATGGGACAGGTGGCAGGGAAGATCTCGAAGTTTTATTTGAAGTCGAGGATGTGGTCGGACAGTATTAAGGTTCCTGATCTCACTGTTTCACTGGGTCCTCGTTGA

Promoter Sequence:
>Vu_24753::LG6:11255594-11257594(-)

ACCAGATACCACGTGCATTGGAAAAATGTGAAACCAGAGAAAAATGACAGAAACTAACTTTCTCTTTTTGAAATCAGATAAACTTGAAAATCTTACTGCGAGATCACACATGCGGTCTCTAATCTTCAAACAGATGAACAGGGTGTGAGAACCCGTAAAGAGGAGGGAGAAAACTCTAAAAAAGTTATTTATAGAGAGAAAGATTGTTTTAAAATAATGAAACTTGTTTATAATTAAACTATTTATATTAAAATCATTTAATATTACAATATTTGAGTCTCACTACTTTTAATCCAATATCATTTTTAAAATATCATTTTCTAAGTCTTCGCAAAAATTATATAAAGTATTAAATAAAAATTAAAACTAACATGTTTTACATTGTTAAAAGAAACCACTGTAATTATTATTGTGATAAAAAAAACAAAAAAGTCTAAAAATAATTATTTTTGCAAAATTAAATAAATTTGACAATGTTATTTTATAATCCATTAATATAATTAATATAATGTATATAATGTTGTGTGACAGTTTTATTCAATAATTGATATGATTTTTAATACTTCTGTGATTTTTTTAAAATTTTAAACTAGTGTTAGTTCTTACCTTTAAAATTTTTATTCTAATTTTAAATTAATTCTAATCCTAAATTAAAAATATTTAATAAAAATATGATTTTTATTAAAAATATCGGTATAATATTTACATAAAAAATAATTTTGATTTCAATTTAAAAGAGATAAAAATATTTAATTTTAAAAGTAATTAAAACTGAATTTAATAAAATTAACGAATATAAAAATCATATTCAAATTGAATATACGATAATAAATTAAATATATGATACTGATAAAATTTTGGATCGACTTATAAACAGTTTTTCAGATAAAAATAATTAAAAAATCACAAATTTACATATGACATACATATTTACTATCATATTCACTATCAGTATTTAAACGACATAATTATAAATAAAATTAGATAAATAAAATTAATAAAAATAATAACCACTCTAATATTTAAACGACACTATCAATAAAAATAATCAAATTAAATAAATTAACAAAAATTTGATTCAAATTATAACCACTCTAATATTTATGCTTTCTCATAATTAGCTATCAATGATAGGGAAGGTTTGAAATCCATAAATATTAACAAATTATAATTAATAAAATTATTAATAATAATTAAAATAATCTGTTTCAAAATTAATTTTGATTGTACAGTTTCTTTTTTCCATTTCTTGTGTGATGTTAGTAAAGGTTTACCTTTATTAATTTGACTTCAATTAATTAAAGATAAGATGAAAAGTCAACGAATATGCGTGTGTGGAGAAGCATTAGTCAACTTGTTTCTGACCACCTCTGCAACTTGCGGGCGAATTTTAAAAGTTTGTCGCTCATCAGATGATATCCCTTATGATTTTATACTGATAAATAAAATTTTAAGGAAAGAAAATAATTTTTTATACTGATAAATAAAACTTTAAAGAAACAAAAAAACTTTTATAAAGTGAAAGGTGTAAACCATTACAGATATTTTTTATTGTGTTTATGTGCATATCTAAGAAAATGAAGAAATGAAAAGGTGTTTGTTGCTGTTGAGCAGCAGTAAGGTTTGAAAATGTGTGTATTGCATTTGCAGTTGAAGAGCAGAAGGAGGAAGGAAGGCGTGTTTTCAGTTCGCACTTTACAGCCATAGCCGCAAAATTGGTTGTCGACCCATTCAATCACCAACTCCAGGTTGAGATAAGATAGCCTCGCGACCAAACCACATCGTATTGTTTAATAATTTTGGTTTTCCTATAAACTCTCCCCTGAACAGTTAATTAAGCTGCTTAAATTCAATTTAACTTCAAACTTCAAAATTCAATTTAATCATCTTATCTCCTTTCGCTATCCTAATCACCATTGAATCTTTGAACTTTGAACTTTGAAGACACCTTCTCCTTCTTCTTTATTTTCTCCTTCTCCTTTTCTCCGTCTTCGTCGCTT

Gene Sequence:

>Vu_24753(-)