Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24848 LG6 12334213 12335643 PREDICTED: transcription factor MYB48-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/C 12334243 3_prime_UTR_variant
G/T 12334344 3_prime_UTR_variant
T/G 12334651 missense_variant p.Glu135Ala
C/G 12334858 missense_variant p.Cys66Ser
C/G 12334908 missense_variant p.Glu49Asp
C/T 12334989 synonymous_variant p.Arg22Arg
A/G 12335060 upstream_gene_variant
G/A 12335095 upstream_gene_variant
C/A 12335104 upstream_gene_variant
A/G 12335123 upstream_gene_variant
G/C 12335220 upstream_gene_variant
C/T 12335490 5_prime_UTR_variant
C/T 12335494 5_prime_UTR_variant
A/C 12335504 5_prime_UTR_variant
G/A 12335510 5_prime_UTR_premature_start_codon_gain_variant
G/A 12335536 5_prime_UTR_variant
G/A 12335537 5_prime_UTR_variant
T/A 12335582 5_prime_UTR_variant
G/A 12335592 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24848.1
MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSTPTKPSCSVHSSISVSSKKHEVDPHASKKAGEESFYDTGGASTQDEGEGEFSMDDIWKDIDMSEENNSFVYGESEEGCNPSASSWEYCCDHLWVMMDEEPYFYALSG*


CDS Sequence:
>Vu_24848.1
ATGACACCCCAGGAAGAAAGACTCGTGCTTGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGGATCGCTCGCAAGTTACCAGGGCGCACTGACAACGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAAAGAGGAGAAGCTGCATCATCATCAACACCGACAAAACCATCTTGCAGTGTTCATTCCTCAATATCAGTATCCTCAAAGAAGCATGAAGTGGATCCACACGCTTCAAAAAAGGCAGGAGAAGAGAGCTTTTACGACACAGGAGGAGCTTCAACTCAAGATGAAGGTGAAGGTGAGTTCTCAATGGATGATATATGGAAAGATATTGACATGTCAGAAGAGAACAACAGTTTTGTTTATGGAGAGAGTGAAGAGGGTTGCAACCCATCTGCATCATCGTGGGAGTATTGTTGTGACCATCTGTGGGTGATGATGGATGAGGAACCATATTTTTATGCATTAAGCGGCTAA


Promoter Sequence:
>Vu_24848::LG6:12335643-12337643(-)
AATGTAAAAAATATATGAAAAAATAACACTTTAGATTCATTTATAAAATTTTACAGCTAAGGTTCTATTACAGGAAGTAAAAAATAAATTGGTAAATTTGGTGGAGAAGATTTTTTACTGATTTAAAAACTAAAAACATGTAAAATCCGCGTTTTACCTTGAAACTATCAGTTTCATCCAAAACGGTCCAAAGGAAAGAATTTGGATTTTACTTTAACCTTCAATTTTCTATTTGTTCTTTATATATTACTCATATACAAGATTATTTTTGTATTTTGTTTTTTTTACTAATTTCTTTAAACTTAAACAAATTTTTTAAAAAATATTTATCGTCAATTAAATTTCATTAAAGAATTCAAAATTTTAGTTTATTTCTTATATATATTTCTATCAGAATATATATGTGGTCTATTTATTGCATCTACTCAAAAGATGATGTTGTGTAATTTTTGAAAACAAATAAAGTTCATTTGCCTTTTATTTTCAAAAAACTGTTTTTAGTTTTCAATATAAAATAGGAAAAGCTGCTTATATATATAGTTGGTGATGAAGGGCTGTACAAAAAAATATAGCAGATCGTAAAATTGAAGGAGAAGTTAAAAATAAAGATGGAAAGTAGAAGAAGATTTTGTACTTGTTTTTGCTTTTATTTTTATTTTAAAACACCTGTTTAATTTGAAAATAATTTTCAAAACTCAATATATTTTGAATGATAAATTGATTGTTTGTGAAAATTGTTTCTATTTTTAGAAAATAACTTTTAAAACTTACAAAAATGAAAAGTGAATCAAACAAGCCCTTCTATTTCTTTGAATTTCAGGCGTATATATTCATAAACTCCCTTGTAAGTCATGGTTTGATGGTTCAGTACATAAGAAATATTCTAATTATTTTAAAAAGATTGAATTAAGTTATAAAATTATTCTTCAATTATAATTAGAACGGATCTTAGCTACAAAAAGCAAAATTTGAAAATTGAAATCATAGACTTTTTAAACCTTTATATGAGGCATGCACATCAAGTTGGAAAAATCGTATTATTTAATATAACCTAAACTGGCCCGACATATAGTGCCACACTCTCTCTGCTGAGGGCACCACACACAAACTTTGGATGCTACATTTATCTAACAATAGTTTTTAGAATAATATCTCTATCCATTTTCAATATTATATATTTCTGAGAAAACATATTAACCATTTCTGCCTATATTCTTCACTTTTTTTGTCTTCTTCCGCTTTCTCTTTTCTTTCTGTGCTGCCCTTTGCAGAAGTCAAGAGCCGTAATATCCATCAAACTCTTCATCAAGCAGCATGGCTTCTCTGTCAACTGAATCCCTTCAAGTTTTCAATTTTCTCACACACCATTCTTTCTGCAATCCTACTTCTAAAAAATCAAGCTTTTTTATTTTTCTTCATATTTCTGTTCTCTGGATGTTGAGAGTAGATGTTAGCTAGCCAACTGTTCAACACTCCCAATGAAAGGCGAATCAAAGAACACCCAAAAAAAGTCTTTACTATGTGATTATATATTAATGCTTTAGACTATTCATAAAGGATTCAAAAGGGTATATATATATATGCTATAAAAACAATAAAATGTACAATATTGCAGAGTGATAGTTAATCTTGTCTTTGTGTTAAATTGAGGCACCAATAAGGCAAATCCATGCATATGATTAGAAGATATGATTAATTAATCAGAAATTTGGGCTTGAAAATGCATAGGGGAAGGTGGAACTGGGGGAGAAAAACATCTGTCAGATAAGTTCAAGATGAATAATAAAGTGGTGTGTATGGGTAGAGGAAAAAAAAAGAAAAAAGAAAAATGGTGAAAGTTACATGAACATATTGATCTATTACTCTGATTATTTCCACGTAGCGGGTGATGTCATCATGAAAAAACGACCAAACGAACGGTGGATATGCAAAATGGCTTATAAAAAATAAGGAGTGAGTACGACAAGGCGTATATATAAATGTTGGTAATGGTTGCATAG


Gene Sequence:
>Vu_24848(-)
GAGGCAGCAAGCGATAGATAAAGAAAGAAAGAACCCTGGAGAGAAAAGATTCCATTTACAGAAGTAGTGGTGTGTGAAAATGGTTCAACAGGAAGTGCGTAAAGGTCCATGGACAGAACAGGAAGATTTCAAACTGGTGTCGTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAAGGTGGCGGGAGACAGTAAAATAGGCGTTAGGCATGCATTATGGAAGAACCACCCTAGCTTTAACCACCTCACTTTGTTGTAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGATGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAAAGACTCGTGCTTGAGCTTCACTCAAAATGGGGAAATAGGTTTGATGATCATAACCAAACATATTATATATGCTCAACTTCACTATACTTTCTTAGTTCCTTTGTCTTTTTTCTTATGTTGTTTCAAACCAAAACTTATATACATGTATATATAATTAGTATTTCGGCAGATTGCTCAGGTAAAACTTCGAATCAACAGTCTGAAACCATTATAACTGAGTTTTATGCTTTGTATCATTGACCCTTTGACTCAAAATCTAATGATATGCAGGTGGTCAAGGATCGCTCGCAAGTTACCAGGGCGCACTGACAACGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAAAGAGGAGAAGCTGCATCATCATCAACACCGACAAAACCATCTTGCAGTGTTCATTCCTCAATATCAGTATCCTCAAAGAAGCATGAAGTGGATCCACACGCTTCAAAAAAGGCAGGAGAAGAGAGCTTTTACGACACAGGAGGAGCTTCAACTCAAGATGAAGGTGAAGGTGAGTTCTCAATGGATGATATATGGAAAGATATTGACATGTCAGAAGAGAACAACAGTTTTGTTTATGGAGAGAGTGAAGAGGGTTGCAACCCATCTGCATCATCGTGGGAGTATTGTTGTGACCATCTGTGGGTGATGATGGATGAGGAACCATATTTTTATGCATTAAGCGGCTAATAGTATGATATTCTATTCTTTTTTCCAACCAATATTTTGTTGATAGCGTATGTGTGGCAGTGGCATGCAGCTAAAGTCTAACCTGTATAGCATTGTTGCGTCTTTAAGCTTTTGGAAGGGTTCGGTTTCACAGTAGGTAGTAGTAGTAGTGAGTGTGACCCAGCTGTAATAATTTTCAGATTAGGCGTAACTCTAGTTTATATCTCAATCTTGGTTTCAGTGCTTCTACTTTCTAAAAACACCCAATAGGATAGCTAGTTGGTCATTCTCATTGTAAAATATCAAGCACTTGTTTGCATCTCAATTTCAGTTTTAATTTCAGTCTCATCTACACTTCTCCC