Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24929 LG6 12997036 13000436 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of developmental process, vegetative to reproductive phase transition of meristem, shoot system development, shoot system development, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, vegetative to reproductive phase transition of meristem, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, vegetative to reproductive phase transition of meristem, vegetative to reproductive phase transition of meristem, regulation of transcription, DNA-templated, flower development, negative regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   zinc ion binding
SNP Position Effect Amino acid change
T/C 12997099 downstream_gene_variant
G/A 12997201 synonymous_variant p.His530His
C/T 12997212 missense_variant p.Ala527Thr
G/C 12997594 downstream_gene_variant
A/G 12997824 downstream_gene_variant
G/A 12997890 downstream_gene_variant
T/C 12998224 downstream_gene_variant
G/A 12998318 downstream_gene_variant
A/C 12998457 stop_lost p.Ter460Gluext*?
G/A 12998464 synonymous_variant p.Tyr457Tyr
G/C 12999048 missense_variant p.Leu263Val
C/A 12999122 missense_variant p.Ser238Ile
T/C 12999193 stop_lost p.Ter214Trpext*?
C/G 12999197 missense_variant p.Cys213Ser
A/G 12999306 stop_lost p.Ter177Argext*?
T/A 12999307 stop_lost p.Ter176Cysext*?
G/T 12999320 stop_gained p.Ser172*
T/A 12999373 missense_variant p.Lys154Asn
T/A 12999455 downstream_gene_variant
G/C 12999458 downstream_gene_variant
T/A 12999459 downstream_gene_variant
T/C 12999462 downstream_gene_variant
C/T 12999465 downstream_gene_variant
C/T 12999473 downstream_gene_variant
G/A 12999507 downstream_gene_variant
T/G 12999516 downstream_gene_variant
G/A 12999521 downstream_gene_variant
A/C 12999524 downstream_gene_variant
T/C 12999527 downstream_gene_variant
G/A 12999528 downstream_gene_variant
T/A 12999537 downstream_gene_variant
A/G 12999726 intron_variant
A/T 12999993 intron_variant
G/T 13000201 missense_variant p.Pro79His
T/C 13000355 missense_variant p.Thr28Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24929.1
MDSSVVVGSSISEPHHEMEFESHEAAYTFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGAWHDSFMEKFNKCIYKSWNEEQFEKRWWKLVDSFSLGDVEWVRSLYDDRTYWVPTFMKDISFAGLSTSSRSECLNSLVDKYIHVDSSLREFIEQYRVILEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKESDGVTTAYTVKDFENNQNYLVEWNTSSSDICCSCRLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNAAMSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGAISEALKQCVSFSNPVENGMRPDSSGTHVCNVEEEYQSIITSNNKAPGPKLNTGNKAVRTGVPCRNQGSIENSGGDKGKVSLVEAGSGKDGFQHMELTDPRSQGVMPMQFHNVVPSLFHNVSAPFHTTPSPHMHDNQRPGGN*


CDS Sequence:
>Vu_24929.1
ATGGATTCTTCTGTAGTTGTGGGTAGCTCAATTTCCGAGCCTCATCATGAGATGGAATTTGAATCTCATGAAGCTGCATATACATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGCTGAGCAGCCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCTAGTATGCATGTAAAGAGAAGGCAAGACGGTAAATGGTATGTCTACAGCTTCGTGAAGGAGCATAATCATGAACTTTTACCAGCTCAAGCTCATTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAGGCGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATACAAATCATGGAATGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTGGAGATGTTGAGTGGGTTCGATCCTTATATGATGACCGCACATATTGGGTGCCAACATTTATGAAAGATATTTCCTTTGCTGGCTTGTCTACTAGTTCTCGTTCTGAATGTTTAAATTCATTGGTTGACAAGTATATCCATGTTGATTCTTCTTTGAGAGAATTTATAGAACAATATAGAGTGATTCTTGAAGACAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGCTGTTGGTCTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTGTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGACGGCGTGACTACTGCTTATACTGTGAAAGATTTTGAAAATAATCAAAACTATTTGGTAGAATGGAACACGTCCAGCTCAGATATATGCTGTTCATGTCGTTTGTTTGAATATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGAAAAGATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAGTTGGAAGAGGTTCAATCAAAGGTGCGGCGATTCAATGATTTGTGTAGGCGGGCCATTATATTAGGCGAAGAAGGTTCTTTATCACAGGAAAGTTACTACATGGCCTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGTAAGTTTTAGCAACCCTGTTGAGAATGGTATGAGACCTGATTCCTCAGGTACCCATGTTTGTAATGTTGAAGAAGAATATCAATCTATTATTACATCTAACAATAAGGCCCCTGGTCCGAAACTGAATACGGGAAATAAAGCTGTGAGAACTGGTGTACCTTGTAGGAATCAAGGAAGTATTGAAAACAGTGGAGGCGATAAAGGAAAGGTATCTCTCGTTGAAGCAGGTAGTGGGAAAGATGGTTTTCAACATATGGAGCTTACTGATCCGAGATCACAGGGTGTCATGCCAATGCAGTTTCACAATGTGGTACCTTCTCTGTTCCATAATGTTTCGGCCCCATTTCACACTACACCTTCACCTCATATGCACGATAATCAGAGGCCAGGTGGCAATTGA


Promoter Sequence:
>Vu_24929::LG6:13000436-13002436(-)
TAGCTTATTCTCACGTTCGTCATCTCTACTTAACTATGTTGCACAAATAATTAAGAACTAAAGTGTATTAGGAAGATCATTAAGTGTATAAATGATAATAACTATTTATATGGTTTAAGTCAAATTAAATAAAAATTCATACATTTATACAACTTACCAGGTAAATGATTTACACATTCATTATAACATTCATTATTATCTAATGTACTGAACTCACTTGAGTATTTGAATATCTTTTATTAAAAACCACGTTCATTCCATTCAAGATAAGATATGAATATAAAAATATTGTTTGAAGAGTCTTTATAGAGTTACTTTACTTTAACATAGTTAATAAAAACACATAAAATTGGATTCATATAGAAAAAAAAAGTAATATATGTAGTCCACTTAAATAACAAAATATAAAGGCATATTAAATTTGCACTTAAAACATATTTATAAGATATTAAAAAAACAATTTAATCAAGATATTATATTATTTATAAAGAATGTTATGCACTAAATTATTTTATTTTTCACTAACATGGCCGTGAAGTTTTTTATATTTGAATATGGTATTCTTTAATTTTTTATTTTTCGCATTTGCAAAGAAATATATTAAATTTTTAATTTGTATACTTTCAAAATTTATATACTTACCCACTGTTAAATATGTAAACTCACACTATGGTAATTTTATTATTTATTATTATTTTTAAATATATTTTGCACACCCATCACTAATTTACATTATATAACTAACAACACTAATTGATCCTGTATTCTACTGATACATATACGTTCCATGTAGGTATATTTATATTTTTATCATATTAAGATATAAATAATCTATGAGTAATTAACTAAGAAAATGAAAAATAATATAATTTAAAATATGTATAATAATGTAAAAAGATATTAAAAAAACTATGAAACTATTAATTTTTTAAAAAGAAAAATTGCTTAATTCGTTTTAGAGAATAAAATTATTTCATTAAAATAGGAGACCAAGGATAATGGTCAAATGGTGTGTATATCTTTGTATAATGCTTCTTGTTTATGTTCTCTTTCCTGAAAGTAGAACTCTGTAATCATCCACACAGATAAACCCTAATTTGTTTTTCAAAGCCAAATTCAGAAGAAAACTATCAGTTTACTCAAGCATCTGGTCAGGGCTTGGATCTGCGCGTATGGAAGCAGGTTTCTCGCATCAAACGCAAAGCAGCTGGAAAAGGGTTCGACTGGGAGTAAGGTTATCTCTGCTTTCTTTAAATTTCGCTTAATCTCTAGAAGTTTTTGGCTCCAATTTACTTTTTATGCTTCATAGTCTTACAAGCCGATGCTAAATAATTGGCAAACCGCTTCAGTTTCTATAAATGATAAATTAATTGATGTTCTGCTTAAGCTCTGTATGGTTTTAGCGTCGTTAGATACATGTTGAGATTTCAGATAGATAAATTTAATTGAGTATACATTAACTTTTTAGCATACGAGTGTTTTTTAGCATACGAGTGTGTTCAGCGCCCCATTTAACACCTACAATGCACTTGGCTGCTTAATCATGAATGTGGTGTGAATTGCGCGAGAGCCATTCCGCTTATCTAAATTAATGAACAATATATTTGAAGAGTAGAGTGGAGGAAAAGTGGATATCTGTTTCCATTATTTCTTTGATATCATAAAGTTAGATTCTGCTAAAGTGGACTGATAATAGAGAATTATGCACACTTGTGTACTTAAATAGCTGTGTGGAAATGTCTTTAGTTGTTTTGTATTGTTTATTTTGATTGTTTTATTGAAATCTAGCGCCCTTCATTTCTTTAATTATATCTAAAATAACGTTGTTTTACTCCTGGCACAATTTCTCAACGAAGCATTGCCCTTCCAATCAGGTACCACCTTTGCGGGATCATTGAGACAAACCTTTGCATCTTTTATCTGTGTGATATTTTTGGACATGTGAAACAACATTTTCGGAAGTGAACTGGGGCTGAACTCTGAATATCGCTGCAATAGTT


Gene Sequence:
>Vu_24929(-)
ATGGATTCTTCTGTAGTTGTGGGTAGCTCAATTTCCGAGCCTCATCATGAGATGGAATTTGAATCTCATGAAGCTGCATATACATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGCTGAGCAGCCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCTAGTATGCATGTAAAGAGAAGGCAAGACGGTAAATGGTATGTCTACAGCTTCGTGAAGGAGCATAATCATGAACTTTTACCAGCTCAAGCTCATTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGAGTGCGTAGGCGAAAAACCTCAAATGCAGTTTCTAAATTATTTAGTGCATATCAGAATGTTGATTGCTTAGAGAACTTTGTGAAACATCAACATGATAAAGGACGGAGTTTGATTCTGGAAGCAGGACATGCTCAATTACTTCTTGAGCTCTTTATGCACATGCAAGAAGAGAACCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTACATACTTTTCTGATGTTGTCTCTTTTGACACAACATATTTTACTAGTAAATATAAAATACCATTGGTACTTTTCCTTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGATGAGACAATATTTACCTATGCTTGGTTACTGCAAACATGGCTGATAGCAATGGGGGAGCGAGCACCACAAGTGCTTCTGACTGACCAAAATGACGCTATTAAAGCAGCTGTTGCCACTTTTCTTCCAGGAACACGCCATTGTTTTTGTTTGTGGCATATTTTGGAAAAGGTACCAAAGCAACTACAAATTTTAGGCGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATACAAATCATGGAATGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTGGAGATGTTGAGTGGGTTCGATCCTTATATGATGACCGCACATATTGGGTGCCAACATTTATGAAAGATATTTCCTTTGCTGGCTTGTCTACTAGTTCTCGTTCTGAATGTTTAAATTCATTGGTTGACAAGTATATCCATGTTGATTCTTCTTTGAGAGAATTTATAGAACAATATAGAGTGATTCTTGAAGACAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGCTGTTGGTCTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTGTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGACGGCGTGACTACTGCTTATACTGTGAAAGATTTTGAAAATAATCAAAACTATTTGGTAGAATGGAACACGTCCAGCTCAGATATATGCTGTTCATGTCGTTTGTTTGAATATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGAAAAGATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAGTTGGAAGAGGTTCAATCAAAGGTGCGGCGATTCAATGATTTGTGTAGGCGGGCCATTATATTAGGCGAAGAAGGTTCTTTATCACAGGAAAGTTACTACATGGCCTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGTAAGTTTTAGCAACCCTGTTGAGAATGGTATGAGACCTGATTCCTCAGGTACCCATGTTTGTAATGTTGAAGAAGAATATCAATCTATTATTACATCTAACAATAAGGCCCCTGGTCCGAAACTGAATACGGGAAATAAAGCTGTGAGAACTGGTGTACCTTGTAGGAATCAAGGAAGTATTGAAAACAGTGGAGGCGATAAAGGAAAGGTCAGATGATCTGTTATTTAATGATTGACCTCCCAGTACTTTTTATTAAATGTAACCAAGTTTGTTCCCTTTTATGCTATAGGTATCTCTCGTTGAAGCAGGTAGTGGGAAAGATGGTTTTCAACATATGGTATGCTATTCCGTGACTCTTATGATTGCCATCGTTATATTTTCTTGTATTTTTAATGAATGTATTTTGCCAATTCATGAAATTCCATGAAAAACTTGTTTTTTGGGACAGAGCTCTTTTACAACATTTTATTTTGGTATATGTATATAACAGAATATGATATCCTCAAGCATTGAAAATTTTAAAATAAATTAAATAAAATGAAAACTAAAGAAAAAAGGATGCTAGGAGCGCAGTGGAGCCGCGGAGACCCTTTTGCATATTTAATAAAACAGCAACATCCCCTAAAAACACACCATTAGCCACGCCCTGGGAAGAACCTAAGTTAAAAAAAAATATCTATCCAAAATCGAAAACATAGGGGCAAGGGAGGAATGTGTGCTGTTTTGTTGCAACCAGTGTGCTGTTTTCAAGCTAGATTTATCCATCATTGTCTCTCTGAGAGAGAATCTTTGAAGCCTTGGTCTGTTTTGTCCTGTTTTGATGATTTTGACTGTTTAAGATATTTTAACTTTTCAATAGACCGTTGATGGAGAATAACGCTGTCCTACAGGCTGTTTTCACCGAATATTTTATCATGCTAGTTTGTTATGTGATTTGGGGACTATCTGACTGTCCGTCTTTACCTGTGGGATAATTCAGGCTGATCTGATAATCAATCACAAATGCATGTTGAGACTTTGTGTTCAGAAGGGGAAAGTAAATGAGAGCAGGCCGAGTTTAGATTTTTTATTGGATGATAAATTATGCAGATTTTAACCTTTGCATATCATGTACAGAAAGAACTGATCGATATATGTAATCTTGCATCTGCGTATTCATTTATGTTGTGTCAATGCCTACAAACATTCAATGTCTGTATTCTTAATGAAACAATTTCATAAATGTCATTCAAATATTAGTGATTGAACGGGGTCTAACATGGTCTAAAGATTTTAATTTCTTTATTTGCATGTTACAGGAGCTTACTGATCCGAGATCACAGGGTGTCATGCCAATGCAGTTTCACAATGTGGTACCTTCTCTGTTCCATAATGTTTCGGCCCCATTTCACACTACACCTTCACCTCATATGCACGATAATCGTTAGCGTGATGATAATTTGCTTTTAAATGGATCTGGAAACCGTGCACAGGGCTGTACATAAGAACTGGCACTATTCAAAGGCACTATACTTCTCACTTTATGCTGTGTTGCAGAGAGGCCAGGTGGCAATTGA