Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24940 LG6 13058872 13061310 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to sulfate starvation, regulation of transcription, DNA-templated, cellular response to sulfate starvation, cellular response to sulfate starvation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of sulfur metabolic process, regulation of transcription, DNA-templated, cellular response to sulfate starvation, cellular response to sulfate starvation, cellular response to sulfate starvation, ethylene-activated signaling pathway, cellular response to sulfate starvation, ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of sulfur metabolic process, cellular response to sulfate starvation, ethylene-activated signaling pathway
Cellular Component   located in   nucleus, intracellular anatomical structure, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
T/A 13059415 missense_variant p.Thr289Ser
T/C 13059601 missense_variant p.Thr227Ala
G/A 13059602 synonymous_variant p.Thr226Thr
C/A 13059811 downstream_gene_variant
A/G 13059819 downstream_gene_variant
G/A 13060165 missense_variant&splice_region_variant p.Thr161Met
G/A 13060174 missense_variant p.Thr158Ile
C/A 13060261 missense_variant p.Gly129Val
C/T 13060422 synonymous_variant p.Val75Val
T/A 13060434 missense_variant p.Gln71His
T/G 13060650 downstream_gene_variant
G/T 13060952 downstream_gene_variant
A/T 13060960 downstream_gene_variant
A/G 13060975 downstream_gene_variant
A/G 13061039 downstream_gene_variant
T/A 13061242 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24940.1
MAEMEEIGPDVCSDLEVDDIRCPNIAEKDVSDEEIEAEELERRMWKDRIKLKRLKERQKLAIQQAAEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMSEADNSRNEEALIRQPSSDNGTSGVTGMLPGVPAENKQAATSSASNYDVDGTDDGIGSVSSKEDRRIQIVETEPPVNPRRVRKHVQDRDQSKQRPRKLRVTSRTVDKPPAQSDNEVLHAEPRSKGLNINQTGAEVVRIQIHGNEQSNETDSAARPLEKELEVPAQLPAPEFDHYSYLHTNNLISTESIYTSGRPIHYPELQNPDMQHEPTYNLYNPAAGYDPGHRQQLHPGNNSEGRPEIDAVHVQAVHMKGDEITGGDLQYFGKDAFQNELDRPIDHSFFGSPLSSMSLDFGGLNSPLHLDDFLGDDEMIQYFGA*


CDS Sequence:
>Vu_24940.1
ATGGCCGAAATGGAAGAAATTGGACCTGATGTCTGTTCGGATTTAGAAGTTGATGATATTAGATGCCCCAATATAGCAGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAAGAATTGGAGCGGCGGATGTGGAAGGATCGAATCAAACTCAAAAGGCTAAAGGAAAGACAGAAGCTGGCGATTCAGCAAGCTGCAGAGAAGCAAAAGCCAAGGCAGTCCAGTGATCAAGCTCGTAGGAAGAAAATGTCAAGAGCACAGGATGGGATTCTGAAGTATATGCTGAAGCTTATGGAAGTCTGCAAAGCTCGTGGATTTGTATACGGGATCATTCCTGAGAAGGGAAAGCCGGTTAGTGGTTCCTCTGATAACATTAGAGCATGGTGGAAGGAGAAGGTAAAGTTTGATAAGAATGGCCCTGCAGCTATAGCCAAGTATGAAGCTGAGTGTCTTGCTATGAGTGAGGCCGATAACAGCCGAAACGAAGAAGCTCTCATTAGGCAGCCTAGTAGTGACAATGGTACATCTGGAGTAACTGGAATGCTACCTGGTGTTCCTGCTGAGAATAAGCAAGCTGCTACTAGTAGTGCAAGCAACTATGATGTCGATGGTACTGATGATGGCATTGGTTCTGTTTCGTCTAAAGAGGATAGGAGAATTCAGATTGTGGAAACTGAACCACCAGTTAACCCGCGCAGGGTTAGGAAGCATGTCCAAGATAGAGATCAATCTAAGCAGCGACCGAGAAAACTCCGAGTGACATCAAGGACTGTTGACAAACCACCAGCACAATCTGACAATGAAGTTTTACATGCTGAGCCAAGAAGTAAAGGGCTCAATATTAACCAGACAGGAGCAGAAGTAGTACGAATCCAGATTCATGGAAATGAACAGTCCAATGAGACAGATTCTGCTGCAAGGCCACTGGAAAAGGAGCTTGAGGTGCCTGCACAACTACCTGCACCCGAGTTTGATCATTACTCTTATCTACATACAAACAACTTAATTTCCACAGAAAGTATTTATACGAGTGGAAGGCCAATACACTATCCTGAGTTGCAAAACCCTGACATGCAGCATGAACCCACTTATAATCTTTATAATCCCGCAGCAGGGTATGATCCTGGTCATAGGCAGCAGCTACATCCTGGGAACAACAGTGAAGGAAGGCCAGAGATTGATGCAGTTCATGTACAGGCTGTGCATATGAAAGGGGATGAAATTACTGGAGGAGATCTGCAATATTTTGGTAAAGATGCATTTCAGAATGAGCTTGATAGACCTATTGATCACTCTTTCTTTGGATCACCGCTTAGTAGCATGTCATTAGATTTTGGAGGACTTAACAGTCCATTGCATTTAGATGATTTCTTGGGTGATGATGAAATGATACAGTACTTTGGAGCATAA


Promoter Sequence:
>Vu_24940::LG6:13061310-13063310(-)
TTTTGTGTTCAGATATAAAAAGATTTATAAAACAAACTTACATAATTAATTAGATTTAAGAACACAATTATTATATTATAAATATGTTATTAATATTTACATACATCTAATTAATTATATTAAACATAATTAACTTAAATATAATTGAATGTATTTTTTTATACAAGTGATTGTGTTTATATGTTTTTACTGTAATCAAATAAATAATTAAAAAATAATAATAATAAATTATATATTATTAATTTTTATTTTTATTAATTTATTTTTGAATATACTCTTTTCTTTTCCTTTTACATTTCATTAATTCTTATTATCAAATAAAAAACATAAGATGAGAGAATAGAAGTAAGGATAGACAATCTAACATCTTGATTTGATTGATTCATACTTAGAGTAAAAGTGCCAGGGGAGAATCTATTATTATTCCTCTCAAATCAGAATATTAATTGAGTTATTCACTGTACTTATAATAATTCCAAATTTTAATATTTTCTTCATTAAAATATTAATACGTATTATTCATCAGACATAATACCGAATTATTCTCATTTAATGGTTAATTATTGGATACAATAATAGGAGATAACTAGATTCATGCATCTTAAATTCCACCCAGATTACATGTTTTTGAGAAACAGTCATAAGATAAAAGCTTATACAAATCATTAGTTTTTTTATTTATAATACTACTAACCCCTCTTCTTGCCCAAAACGCTTTTATCTCCATTTAAATAAAATATTAAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGCCGTTTCTGGTTTTCGTCCCTCTTCCAAAGTAAGGTACAATTTAGTCCTCAATCTTTAAAAAACGTTCGTTTTAGTCGAAAAAACGAACGTTTTGAGGACTAAAACGAGGACTAAAAACAAAATTTTGAGGACTAAAACGAACGTTTTTCTAAAGAATGAGGACCAAATTGTACCTTACTTTGGAAGAGGGACGAAAACCAGAAACGGCCAATAGTTTAGGGACTAAAAACATATTTAACCCAAATATTAATTATGAAAAAATTTCAATGAATTACTTAATTTTCACAATATTATTATTTTATTTAACACGAGAATGGTAGAAAATAAATATTTATTTAATATAATTTAAATTATAATAAATTGATGTCATAAAGACTTAATTATTTATTTGATTAACATTATTAATATTTTTTATTTTTATACTTAAAGCTTATTTGTTTTCCTTTCTAGATATGTTCTTTTTAATCTATTTCAGTTTCTAGAAATTAAAACAATAAATACTTAAAGACATTAAAAATAATGTAAAAAGGCCTAAAAGTATTAAATTATATATAAGGATTTCAAAAAAATTGTGCAGTACAAGAAACATTTTAAGCATATGAATGATATTTTTTTAATTTAAAAAAATAATTTATATTTAATACGATGCTATGACAACTCAAGATATTAGAAATGATAAGTAAAACGAGAAATGAATTAAAGGAATCGATATCATGTATAAATAAAGATAAAAATTATTAGATTTTATACAAATATTGAAAAATTATGAAACATTAGTAGATATAAATATGTAAAACTTAAACAAAGCAATTGGTTCATGTCAATTTTGTTTTAAAAAATTAATAAAATTGAGGCCGTGGATTCTGATAGAGGGAGAGAAGAGAAAAATAAAAGGTTTGAGTGATGGAAGGGTGAGGTGCACAGGACATAGGATAGGCGTAACCACAGAGAATTTTGACATTGAATGGCACACTTTCAATTAAAATTGTCTTCTATCTCTCTCTTTCTCACTCATCTCTTTCTTTCTCTTTCTTCTCCTTTCTGTCTCACCCCAAAATCTTTAGGCTCAACCCACCATCCAATTTCCAACCATAGTTCGTCACAAAAGCTAAAACCTTTTAGGGTTCTTATCATCTTCGCTCAATTCGCCAATAACAGAAAGAAAAAAACAGGAAACCCAGGACGAAACGAATACAAAAGTTCAAATCTTTTTGCGATTTAG


Gene Sequence:
>Vu_24940(-)
ATGGCCGAAATGGAAGAAATTGGACCTGATGTCTGGTGTGTCTATTATGTTTTTTTTTCAGGAGTTTAATTCGGTTGCATGTTCTTCTGTAATAAAGTTTAATATTTTCTCTTTGCCCAGTCCTTTTAGATATATATTTGTTGGTTTATGATTTGTGAATGCTCTCTGTATTTTTTTTTTTATATAGCCTTCCTCCTTGAATTTCTATTGGCTGTTGTCAATCATAACATAGTTTGATTTTTGGATTCATCCTATGGGGACTTCATGCTGGTTGTGGGGTTTTCAATCTGATATGCTGTGTCAAATTGTTAACTATAATTTTACTGAAGAATCTGTCTTAGGAAGGTGTGTGGGAGATCATTGAGGCCTTTAATGTTTAGTTATAATAGAAATAATCTATGGTCCGAGGGAGAAGAAATTAGGATGTGATTTTGATGGGTGATAAAGGGTTAGTTATAATAGTTATTAATTAGCCAATCCTGGTACAAATAATCCGAAAAGGTTTCATTTTGTATTGTACTTTGAATGTTCCAGTGGTCATTTAGGACATTGGAGTTCAGTTTTATGTGTCCAGTGATTAGTGGTGACCAAGTTAGCCTACACTTTTTAAGTTCAAATTTGTACCCTTTTAACCAATCCAAGAGATTTTTTTATATAATAAAGAATCTTGTGATTAATGGTCATGAGTTGAACTGCAGTTCGGATTTAGAAGTTGATGATATTAGATGCCCCAATATAGCAGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAAGAATTGGAGCGGCGGATGTGGAAGGATCGAATCAAACTCAAAAGGCTAAAGGAAAGACAGAAGCTGGCGATTCAGCAAGCTGCAGAGAAGCAAAAGCCAAGGCAGTCCAGTGATCAAGCTCGTAGGAAGAAAATGTCAAGAGCACAGGATGGGATTCTGAAGTATATGCTGAAGCTTATGGAAGTCTGCAAAGCTCGTGGATTTGTATACGGGATCATTCCTGAGAAGGGAAAGCCGGTTAGTGGTTCCTCTGATAACATTAGAGCATGGTGGAAGGAGAAGGTAAAGTTTGATAAGAATGGCCCTGCAGCTATAGCCAAGTATGAAGCTGAGTGTCTTGCTATGAGTGAGGCCGATAACAGCCGAAACGGTAACTCGCAGAGCATTCTCCAAGACCTGCAAGATGCAACACTTGGATCACTTTTGTCTTCTTTGATGCAACATTGTGATCCTCCTCAGAGGAAGTATCCATTGGAAAAGGGTGTACCTCCACCATGGTGGCCAACTGGTAATGAAGATTGGTGGTCACAGTTGAATTTACCTCATGGGCAGAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTGGGAGTGCTCACTGCTGTTATAAAGCACATGTCACCTAATATTGCAAAGATAAGGAGGCATGTTCGGCAGTCAAAATGCTTGCAGGACAAGATGACAGCAAAGGAAAGTGCAATTTGGTTGGGGGTATTAAGTCGAGAAGAAGCTCTCATTAGGCAGCCTAGTAGTGACAATGGTACATCTGGAGTAACTGGAATGCTACCTGGTGTTCCTGCTGAGAATAAGCAAGCTGCTACTAGTAGTGCAAGCAACTATGATGTCGATGGTACTGATGATGGCATTGGTTCTGTTTCGTCTAAAGAGGATAGGAGAATTCAGATTGTGGAAACTGAACCACCAGTTAACCCGCGCAGGGTTAGGAAGCATGTCCAAGATAGAGATCAATCTAAGCAGCGACCGAGAAAACTCCGAGTGACATCAAGGACTGTTGACAAACCACCAGCACAATCTGACAATGAAGTTTTACATGCTGAGCCAAGAAGTAAAGGGCTCAATATTAACCAGACAGGAGCAGAAGTAGTACGAATCCAGATTCATGGAAATGAACAGTCCAATGAGACAGATTCTGCTGCAAGGCCACTGGAAAAGGAGCTTGAGGTGCCTGCACAACTACCTGCACCCGAGTTTGATCATTACTCTTATCTACATACAAACAACTTAATTTCCACAGAAAGTATTTATACGAGTGGAAGGCCAATACACTATCCTGAGTTGCAAAACCCTGACATGCAGCATGAACCCACTTATAATCTTTATAATCCCGCAGCAGGGTATGATCCTGGTCATAGGCAGCAGCTACATCCTGGGAACAACAGTGAAGGAAGGCCAGAGATTGATGCAGTTCATGTACAGGCTGTGCATATGAAAGGGGATGAAATTACTGGAGGAGATCTGCAATATTTTGGTAAAGATGCATTTCAGAATGAGCTTGATAGACCTATTGATCACTCTTTCTTTGGATCACCGCTTAGTAGCATGTCATTAGATTTTGGAGGACTTAACAGTCCATTGCATTTAGATGATTTCTTGGGTGATGATGAAATGATACAGTACTTTGGAGCATAA