Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25072 LG6 14217614 14221820 PREDICTED: uncharacterized protein LOC108334307
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to ethylene, response to auxin, regulation of transcription, DNA-templated, response to nitrite, regulation of transcription, DNA-templated, response to ethylene, response to gibberellin, regulation of transcription, DNA-templated, response to gibberellin, regulation of transcription, DNA-templated, response to auxin
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
G/A 14217653 3_prime_UTR_variant
T/C 14217658 3_prime_UTR_variant
T/C 14217660 3_prime_UTR_variant
T/A 14217669 3_prime_UTR_variant
A/G 14217671 3_prime_UTR_variant
A/T 14217678 3_prime_UTR_variant
T/G 14217679 3_prime_UTR_variant
T/G 14217691 3_prime_UTR_variant
A/G 14217694 3_prime_UTR_variant
A/C 14218226 missense_variant p.Val237Gly
C/T 14218240 missense_variant p.Met232Ile
A/T 14218432 intron_variant
G/A 14218433 intron_variant
C/T 14218435 intron_variant
T/G 14218504 intron_variant
A/G 14218660 intron_variant
C/A 14218666 intron_variant
A/G 14218668 intron_variant
C/T 14218675 intron_variant
C/G 14218806 intron_variant
T/C 14218949 missense_variant p.Ile155Val
T/G 14218957 missense_variant p.Lys152Thr
G/T 14218986 synonymous_variant p.Thr142Thr
G/T 14219106 intron_variant
G/C 14219333 intron_variant
C/A 14219355 intron_variant
C/T 14219421 intron_variant
C/T 14219503 intron_variant
C/T 14219532 intron_variant
T/A 14219562 intron_variant
C/A 14219565 intron_variant
T/C 14219592 intron_variant
G/A 14219593 intron_variant
A/G 14219663 intron_variant
T/C 14219692 intron_variant
A/T 14219698 intron_variant
C/A 14219800 intron_variant
T/G 14219802 intron_variant
T/A 14220002 intron_variant
A/G 14220070 intron_variant
A/C 14220119 intron_variant
G/T 14220135 intron_variant
T/A 14220136 intron_variant
G/T 14220216 intron_variant
A/T 14220233 intron_variant
A/T 14220271 intron_variant
G/A 14220305 intron_variant
A/C 14220384 intron_variant
T/A 14220392 intron_variant
G/C 14220408 intron_variant
G/T 14220414 intron_variant
T/C 14220546 intron_variant
C/T 14220599 intron_variant
A/G 14220707 intron_variant
A/C 14220840 intron_variant
C/T 14220842 intron_variant
C/A 14221054 intron_variant
A/T 14221090 intron_variant
T/C 14221108 intron_variant
A/G 14221206 intron_variant
T/C 14221378 synonymous_variant p.Pro79Pro
G/A 14221384 synonymous_variant p.Ser77Ser
G/T 14221412 missense_variant p.Ser68Tyr
T/G 14221537 synonymous_variant p.Gly26Gly
G/A 14221651 5_prime_UTR_variant
G/A 14221688 5_prime_UTR_variant
A/G 14221695 5_prime_UTR_variant
A/T 14221710 5_prime_UTR_variant
G/A 14221734 5_prime_UTR_variant
G/C 14221746 5_prime_UTR_premature_start_codon_gain_variant
A/T 14221748 5_prime_UTR_variant
A/G 14221772 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25072.1
MTRRCSHCSNNGHNSRTCPSRGVGAGVKLFGVRLTDGSIIKKSASMGNLNLASTHHHSSPSSSNLAASSPNPSSPCSDPPHEPQGYLSDDPAHISTFANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVTRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMTSDPPSVPEEQVLLPPSENSQPCTGKSQPSLNLSLKSEFEPMETSQENMEQTNETMMGSNVLTSMAPHGFFPTYLPVPFPIWPSAAAPFEEVKGGETSHHQVHRPIPVIAKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKNKAIQAV*


CDS Sequence:
>Vu_25072.1
ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCGTCGCGGGGGGTGGGCGCCGGAGTCAAGCTGTTCGGGGTGAGACTGACGGATGGATCAATCATAAAGAAAAGTGCCAGTATGGGAAACCTTAACCTCGCCTCCACACACCACCATTCTTCTCCTTCTTCCTCCAACCTCGCCGCCTCCTCTCCCAACCCAAGCTCTCCCTGCTCCGACCCACCTCATGAGCCCCAAGGTTACTTGTCCGACGACCCCGCCCATATCTCCACCTTCGCTAACCGCCGCGGTGAAAGAAAAAAAGGTGTTGCGTGGACTGAAGAAGAGCATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGCATAGCACGTAATTTTGTCGTAACAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCGGATATGACTTCAGATCCACCTTCTGTGCCAGAAGAACAAGTTCTGCTTCCACCTTCTGAGAACTCCCAACCTTGTACTGGAAAATCGCAGCCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTTCTCAAGAAAACATGGAACAGACCAATGAAACTATGATGGGATCGAACGTACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAGCTGCAGCTCCTTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTGCCAAGGAACCTGTCAATGTTGACGAACTCGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAACCCTCTAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCCGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGA


Promoter Sequence:
>Vu_25072::LG6:14221820-14223820(-)
TTTATTTCTTTAAAGTTATCAATCATATTCAACTTTAATTCTTAGCAAAACCAACCTTTTTACATACAAATTATTAAAAATATTATCTTCCTTTCGTTACTTGTTATAAAACTATACAATAAGACCTTATCCTTATCATTATTTGAGACAGGATCAAAGACCATAGTGTTCTCGGGTTTCGCACAAACAAAAAGAATGAAAAACTTTAGTATTAGACAGAATGAATTGTACAAAATAAATAAAATAAAAGAATAAAAACTTTAATCGAAGATAATTTTTAATGGTTAATTATTATTTAATTAGTTATTACATTTTAACTTATTTTGTTAGTTGTGAAAATGAAACAAAGTATATAAGTTTCCCATCTCTAAATAAATAAATTTGGATTTTAGGTATTAGGATTATGAAAATCATATTTTTTTAAACTAAAATTATTTATTAAAACAGATCCATTTTAAAAATGAAGAGATATTCGTTTTAGATTATGTGAAGAGAAAACACGGTGGGTGACGTGTAATGGCGTGAAGCCCACGTAAGGTAGGTGGGGCCCACCATATGTTCCACGTGTCTTAATACTAATCTCTCTGATCCGTAAAGCACATTCATTGGCCTTTTCTAGAGTCCTAATTTGATCCAAACACCTCCCAATCACTTCACCACAAATTAAATCTAATCAAATACCATCCATCCATTGCCGATAATTGCGCATGCTTCCTTTTACATTAAACAATTCAGATTTAAATTACTGTTTCATGAATGAAATTCAATGCATATAATATTTATTTTATATTTAACAAGCAGTTTTCATATTATTGAAAGTTCGATTATATAATAACCAAAGAATTAAATTAAATATTGGTGCTCAAATATTTCCGCACTGAAGAGTCAAAGTCAAGCACAAAAAGCTGTCTTAGAACTTTTTTTATAATTTAGGATAGAGATTGAAAAAAAAAGAAATCCTTATCCAAATAAATAATGCTACTAGATAACTTTGATTGAAAGAATATAACATAATACCACAGTCTCAGAATAATTATCACTATCTTTATTAAACAGAAACATTTTTTAAGACGTCAAATAGAAAGTAACTTTCAGATTTATTTTTTATTTTCTTAAAATTGTATTGATGAATCATTTTCATGATAAGAAGAGGTGATATTCATGCGGTTGATTATTTAAAATATTGATTATTTAAAATATTTGTGCAACGGGAATAAAGAAATTGTCCTAATGGCTTAAATAAAGGAAAACGTTATATTAATTTTTTTTGTTGTATGTCAATTAAAGCAAAGTGCCGTTTTGTTTAACCAAACTTAACCTTATTTAGAACATTATATAAAGATTTTCTCTTTGTTCATATTTTATTTTTTATTATATTTTTGATGATATCTTTTACAATTAATTTTATTATTTTTTAAAATTAATTTTTTTTATTTAATAATTTTCTTTTTCAATTGAACTAATTTTTAAATTAAAATAATTATTTTTAGTAACAAATCATCTATAACAATATAACAAAATTATAAAATTTAATCATATTTTATTATTATATGTGATTATTACTGAATATTGAAAAAAATGTACTGGACAGTGCAATATAGACAATGTCATGGAAGCACTTTTATTTATGATTAATCCATTTTTTCACTGGCTCACTCTACAGGCACGTGTTTGGAAGTGTAATGTACGTGCCATCACGTGAAAACAACACGCTGCTATTTTTTTTTTTTTTTCTCTGTGGACTCAGTTGAGGAGTAATCACTATTTCCACGAAACGGCTCATATTTCTCATTTAATAAGTGTTTATGTAAATCAATTTTTTATATTAAATAAATATTTATGAAAAGGATTAGATGGAAAGAAAAGGAAAAAGGAAGGAAGAGGAACCAGCGATGGAGCGCGTTCCACTGACACAAAATGATAAAAGAGGCGTTAATTTAGAATTCCAGATTTAACCTCGAGGATATTCCTAAAACCCGGAATTATCCATCACCAGCACC


Gene Sequence:
>Vu_25072(-)
ACCCTGTTCTGTGTTTTACCTTAATTAACCAAACACATGCATTCTTTCTATATCCCTTTTCTCCATCCATAGTTCCAATTTCCTTTCCCATAACCATTTTCTATTTTCCTTTCCTCTCCTTATTCTTCTTCTCCTCTTTTCTTCACTTTCTCTCTCCATCCATCCCTCCCTCCCTCCCTGGACCGAGTCACGCGGCGAGGATCGGCATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCGTCGCGGGGGGTGGGCGCCGGAGTCAAGCTGTTCGGGGTGAGACTGACGGATGGATCAATCATAAAGAAAAGTGCCAGTATGGGAAACCTTAACCTCGCCTCCACACACCACCATTCTTCTCCTTCTTCCTCCAACCTCGCCGCCTCCTCTCCCAACCCAAGCTCTCCCTGCTCCGACCCACCTCATGAGCCCCAAGGTTACTTGTCCGACGACCCCGCCCATATCTCCACCTTCGCTAACCGCCGCGGTGAAAGAAAAAAAGGTTCTCATGGTTTCCATTTCTCCATTTCTTTACCCTTTTATTTAGCTTATTTCGCTATAATTGGAATCCGAATCGGAATTTATTTTATTTGTTGGTTTCACATTTTGTTTGTCCTGTTAGTTTTGTTTTTTCATTCCCTATTTGTGTTGTTTGAGGATTTCTTATTTCTTGCATTTCCTAAATGTCTATGTTAAATACCATGCTTTTTCCAACCTCCCCTGTCTTGGAACTAGTGTATTTTGGTTTTCTCCTTAGTGTTTTATGCAGTTGCTGGTCCTCCCAGGGGGCAATGGCTGTATTTAATGTCTTGATTGGTGGGTAATTTGGACGAATGCGGATCATTTATTATATAGCGTGTATGATATCATACTCCAGTTGGGAGCTCATGGCATGCCGGTTCATTGAATTTGTATGATATCATACAATTTTAACTTCAATTTTTTATCACTTGATGATAATATTGATTAAAATAATATTAACGAATTCTTACATGGGCAAGCGGTGGTATATTTCCGCATCCATTTAATTTATTTGGGATATCGGAAATTGGGGCATCCATTATGGTGCAAGCAATTAAAAAAAGAGAAGTAAATGTGCTTATTTGACAATTACTGGCATTTCTGGCTTGTGGAATCTGTTCAAACCTGATTGAGAGTTTGTTGCTTGAGTCTAATTACCTCTCTAAGCAATGTTCTTGGATGGTTTAACTAGTTTAGTTACTGTTGTTTGTTGCACATTTATTTGTTTTTATAATTTTGGCAAACAGTAGCTTTTGTTTATTAATCATGATCTGCTTGATACCTAAATAGGCAGAGTTGGTGTGGTAATTAATTATCATGTTTGGCTTTAAGATAGACACAATCATGACTTTTGGTTATCCCCCCCTTCGGACAGGGGTCATACATGAATGCTTAGTAGTTTAATAGAAAAATCACAGGGCTAAATGCATGAAGTATTTTCAAAGGGAAAGACAATCAAATTATGTTTATGCTTATTATTTGCATATTTATGTGAAGGTTTTAAGTTAACGTTTTATCTGAATGACTGGTGCCTTCTTTCATCTGAATGACTGGTGCCTTCTTTCATCTGAATGACTGGTGCCTTCTTTCATCTGAATGACTGCTGCCTTCTTTCGATACCAATCGTTGTGTAATAGCATACATTTCATGACAACGTTTTTTCAAGTGTAGAAATTTGTTGACGAATATTCATTGATATTCTCTGCTCAATTTCAAAGCCAACAATTTTGTTGATGATTTGCTATTCGTCCTAAGGTGGCTTTGTAATTGAATTATTTTGCTGAGAATGCTATTTATTATTCTTGATATTCCGTTCTCTGTAGGCTATAGTTTGTTTAACTAGGACCCTCTTCTTCCAGAGAGATTCAGTCACATGAAATCTTTAACTCTTGGAATGGTGATGTTCGGTTCTAATCAATGGTCAACAGATAGTTAACTTCAGTAAATTTTGTTACACTTTTACAAGAAAAAGAAACGGATTCTTTACAATTTTACTGACAAGGAAACTGGTTTATGTACAGAAAACAACAGAAACAAGAAAAGGTAAAAAAGAGTATTTAATACGCATACAAACTCACTCATTAATTTTAGTTACAAAGGAAAGTACTACTCCTATGGTTTTTTCTTTAGGGTCCATTTTTGAAATATATTTTTGTTTTTATTTGAATTTTATATTTAAAGTTCAAGATAACCTTAATTACTTTTTATTTTGTTATATACCCTTATCTTTCTCCAAAGGAACATGAAACACACTTAAAAAGGAAGGAAGTAAGGTAATTAACTGAAATTAACTCTCTATTGACACTAATCCCATTATGTCATACCTATTACCTTATCTATAATGTTTTCTACTTTGGTACTTAGTCCCACTGTTCCTATTTAATGGTCACTTTTTGAAGGAAAAATTGTTCCTTTTTATCTGTAATTTTAAAATTTTTTTTTCCTATTTATGCTCTTACTTCCAATTTGATCATGCATTGAAAATTGTTTGTAAAGAGAAAACTGAAAGAAGTATAATAGCAACTTATTTAAAATCGTGTTGAAAATAAAGGATTAAATGTTTTTCTTGATTTAGATGAAAGAATCTAAACAAGACAGAGGCTGGGAAGTACCTTATTTTCTCACATACCCTTTTGTGTCTGGTGATTGGATTACTTTATTCAGTATTTACTCGTTTGTTTTAGGTGTTGCGTGGACTGAAGAAGAGCATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGCATAGCACGTAATTTTGTCGTAACAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCGGATATGGTTGGTTTTATTCATCGTATCACATCTAATTGGAAATCATGCGCACATCTTATTATGCCTCAATGTTTTCTAATGGAGGGAAAATTAGTGTCGTTCTTGCTTGTGCATGAACAGCCATACTCGAGAATACATGCCATCTCTTCTCTGCTATAAGTTTAATAGTTTTTTATTCCCATTGCACATCTACTTTCTTGTGAATACGTGTCATGTCTTTATTGAAAAATACCAAGGTTTTGCTTGGGTTGAATATCATGACAAATGACAACTTTATTGGACATTCGACTCTGGATTTTGCTTTAGATAAACTTTTCTGTTACCATGATGCACTTACAGTATTATGTATTTGCCAAGTAAATGGGTCATCCTTGTTCTTGCTGGAAACTGCCAATTAGTTATGCTCTAAGATTCTTTTGTAAACGTAGTGGTAATATTTTTCCTCTGCATCTCTGGCTAACTTTTATTTTTAATCATGTCAGACTTCAGATCCACCTTCTGTGCCAGAAGAACAAGTTCTGCTTCCACCTTCTGAGAACTCCCAACCTTGTACTGGAAAATCGCAGCCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTTCTCAAGAAAACATGGAACAGACCAATGAAACTATGATGGGATCGAACGTACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAGCTGCAGCTCCTTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTGCCAAGGAACCTGTCAATGTTGACGAACTCGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAACCCTCTAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCCGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGAACTTTTAAGGTCTGGTGAAGATAGCCGCAGTAATTAAGCCTTCTTTTGCTCTTCTTTTCATTTGTACTATCATATATATTTTTTTTTTCTGAGCCCTAGTGTTTAACCTTCCAATCAGTAGAGCAAGTTATATGGTGGCATGTAGCTCAGGTTAGATCAATTATTGGCAAATATTTATTCTTTCTAACTGTAAACAAATGAAGCTTTAATAATCAAATATCACCAGGAGGTCTTTGTACCTCTAGGTTTGGTTATTTAGGGTT