Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25315 LG6 18179739 18184732 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, protein storage vacuole organization, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, anther wall tapetum morphogenesis, anther development, positive regulation of transcription, DNA-templated, anther development, regulation of transcription, DNA-templated, anther wall tapetum morphogenesis, gibberellic acid mediated signaling pathway, positive regulation of transcription, DNA-templated, anther development, regulation of transcription, DNA-templated, anther development, negative regulation of cell population proliferation, pollen sperm cell differentiation, pollen sperm cell differentiation, pollen sperm cell differentiation, gibberellic acid mediated signaling pathway, anther wall tapetum morphogenesis, regulation of transcription, DNA-templated, pollen sperm cell differentiation, negative regulation of growth, positive regulation of programmed cell death, anther wall tapetum morphogenesis, anther wall tapetum morphogenesis, positive regulation of transcription, DNA-templated, positive regulation of programmed cell death
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 18179871 5_prime_UTR_variant
T/A 18179883 5_prime_UTR_variant
G/A 18180624 intron_variant
A/C 18180641 intron_variant
G/T 18180707 intron_variant
G/A 18180790 intron_variant
T/G 18180834 intron_variant
C/T 18180932 intron_variant
G/C 18180940 intron_variant
C/A 18181239 intron_variant
A/T 18181335 intron_variant
T/C 18181443 intron_variant
C/T 18181470 intron_variant
G/T 18181516 splice_acceptor_variant&intron_variant
T/C 18181710 synonymous_variant p.Asn59Asn
A/T 18181719 synonymous_variant p.Ala62Ala
A/T 18181732 missense_variant p.Thr67Ser
A/T 18181734 synonymous_variant p.Thr67Thr
G/A 18181737 synonymous_variant p.Gly68Gly
T/C 18181738 synonymous_variant p.Leu69Leu
A/T 18181743 missense_variant p.Leu70Phe
G/A 18181995 intron_variant
T/C 18182126 intron_variant
T/C 18182153 intron_variant
A/G 18182207 intron_variant
A/G 18182511 intron_variant
T/G 18182516 intron_variant
T/C 18182521 intron_variant
T/C 18182643 intron_variant
A/G 18182651 intron_variant
T/G 18182769 intron_variant
G/C 18182853 intron_variant
T/A 18183195 synonymous_variant p.Val211Val
A/T 18183335 missense_variant p.Tyr258Phe
A/G 18183384 synonymous_variant p.Ser274Ser
A/G 18183397 missense_variant p.Thr279Ala
G/A 18183808 missense_variant p.Ala416Thr
C/T 18183810 synonymous_variant p.Ala416Ala
G/A 18184070 intron_variant
G/A 18184082 intron_variant
G/T 18184213 synonymous_variant p.Pro466Pro
T/A 18184238 missense_variant p.Phe475Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25315.1
MGRVNNEIEDEVLPSDVSAAQSNGESYEGSTSVVLKKGPWTSTEDDILVDYVNKNGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQGFQESQRNQSNGGLNGGNRMHLDMLQKNSYEIHGAIFDSLKDNQGILPYAPKFSDVSVCGNMLKGLDSSSQYCSVMPPASPKNKRLRESTIPFNGSKDKKNNGLYPFCQNRDNNSDKIAHSFGMQTLLDPGPSSHNSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELHLGSWGTSPPPPMLESVDDFFQSHTPISTLESDCSSPQNSGLLDALLYQAKTLSSSRNHCSDKGSNSSTATPGDRGDNSALNVYETEWEDYADPVSPFGATSILNECPALIGSENSLDEQLSLQTFTGNIPKLEFVDQVWTPDNENQTLSFLNITRPDLLFASDWHELGFGHGKNQAITTDTTTTLLGDDFAADHKHMTSGTSQSSQVWGFGSCASAANNMHALCHLSDLG*


CDS Sequence:
>Vu_25315.1
ATGGGACGAGTGAATAATGAAATTGAGGATGAAGTGCTTCCCAGTGATGTGAGTGCAGCACAGTCAAATGGTGAGAGTTATGAAGGAAGTACCAGTGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAAAATGGGGAGGGGAATTGGAATGCAGTTCAGAAGCACACAGGGTTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAAGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACCGATAATGAAATAAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAGCGGGCTGGGTTGCCACTTTACCCTCCAGAAGTGTCTTTGCAAGGTTTTCAAGAGAGTCAGCGTAACCAAAGCAATGGTGGACTTAATGGTGGCAATAGAATGCATCTTGATATGTTGCAGAAAAATAGTTATGAGATACATGGTGCTATATTTGATAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCTAAGTTTTCCGATGTTTCTGTTTGTGGCAATATGCTGAAAGGTCTTGATTCTTCTTCTCAATATTGTAGCGTTATGCCACCAGCATCACCTAAGAACAAGCGTCTTAGAGAGTCAACAATACCGTTTAATGGTTCCAAGGATAAGAAAAACAATGGTCTATATCCATTTTGTCAAAATCGGGACAATAATTCTGATAAGATTGCACACTCATTTGGAATGCAAACACTCCTTGATCCTGGTCCCTCCTCACACAACTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTCATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCCATGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCATACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAGGAACCATTGTTCTGACAAAGGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGTGACAACTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCCGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTATAGGCAGTGAGAATTCATTGGACGAACAGCTATCTCTCCAGACATTTACTGGCAATATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCGGACAATGAAAATCAAACCTTGTCCTTCTTGAATATCACTCGTCCAGACTTATTGTTTGCTTCAGATTGGCATGAGCTAGGTTTTGGGCATGGCAAGAACCAGGCCATCACAACTGATACAACAACGACCCTTCTTGGAGACGATTTTGCCGCTGACCATAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCATCGGCAGCCAATAATATGCATGCCCTCTGTCACCTATCCGATCTTGGTTAA


Promoter Sequence:
>Vu_25315::LG6:18177739-18179739(+)
TTGGTCTCCATCAGGATCACTGCGATTTTTCATTTGATGATGAAACTTAATGATTCTTTGTGTAGTTAATGTTGCAGATGAGGTTGCATGTGATGTTATGTATTGTTATTTGTTAATCATATCTTGTATTGCTATGATTGGTGTTATTAGTAGCTTACCTCGTACTTGTCTGTGTTTATGTTTGTTATTGGAATTATCAGCGATGATCGTATAATATATTATACGTGAGTAGATGATGTTGTAGATGTTCCAAAGGCATGATGGATTCGTGAGATGATGGGAAAAATTTAAGTTTTTTTAAAAGTTCTTTTGTTAGAATTTTGAGACAATATAATTCAGAATTATCTTTATTCCTTTGAATATTTTAATTCGTGAATAATGTAATTTAGACATTGCTTTTGGAACGTATATGATTTTCAATTATTTTCACACGTTTAAATATTGGAGTTTTTGAAAAATATGTTTCCACACTATGAAAGATTTTGAAATGTTCGGTTTTTGTAACAACTCGACACACCCTGAATTTGGGGCATTACATCGAACGCCTTCATCAAAGTTGTTACACGCTCTTACCACCTTTGCCTTTTGAAGTTGTGGATCTGCTCCCTTTTTCATCATGCATGGTGGCACGTCTCGCAACGATTCAGAGCATTAGACTCTTTTTCCTCTTTTAGGTTCATCGTGCGTGGTCGCATGTCCTATCTCCTCTTGAGACAACTATTTAGAGTATCAAAGTTACTTTTTTTTCTTTTTCATGTGCCTTGATCGAGAATCTTGGATTTATATAAAAACTTAAATTGTTAAATATTAGTTTATTTGTATTTCTAGGGTTAATAATGTAACATTTAGTTTTTATGTTTACTAAAATTATTTTTAAAAGTATAAAAATTAAAATTTCAAGGATTATTTTATAAGTTAAAATTTTAACTATAGTAATTTATTTTACAAAGCTCATAATTGATCTAAATTTTAATTTTTGTTTACTTTTTCTCTAAAATTATGTGATTACTTCTCATTACTTTTTCAAATAAGAGAACGTAATTTAGAAAACAATAAAGTTTAGGATAATTTGATCTGATCAAATTATATTTTTGAGTATATTTTATTTTTTCTTAGATCTTAAATTTATCTTCTTTAGTGTGGTTTGTATGCAGTGAGTTCTGTATCTACATACATGTGATATCTGAACTTAATAGATTAATCTATACTAATTTAGGTCCGTACTTATATGTTTTATTTGTGAATTAGGTTTCATAGGAGCAAGTTAGGAATGCTTACATTTTGAGTTATTTCCTAGGAGAGCATATAAAGTGACGTTGCAAAAGCTAGACTGTAATTGATTCTATATTTTATGTATTTACGAGTTTGTTGTGATCTTTTTTTTTAAAAAAAAAGTTATGTGTTTTATTTATTTGTATTTATTAAAATGTATAGAGATATACATTTATTAAAAAATTAGAAAAAATATGAATATTATTTACTAAAATAAGCAATGAGTATATCTATTTTAACAGTAAAGAAAGTACGAATGTAATTTAGTATGATTTTAAGAGAAGTAAAAATAATTTACATTTTAAGAGAAGTATATCTCTCTTGCATTCCTTACCTTCTTAATGCAATACGTCATGCTCTTTCATAATTTTTTTAATTCCTTAAATAACAGTGGAATATTATATATTAAGATCTTTATTTGTGCAATTTACTTTTTCCTTACACATAGTCTTATGAAAACTTATTGATTATTTACATGATAGTACAAAATTTAGAGTTTTTTATCTTTATAATATACTACGACATACATAAATTATCAAATCACAACCAAATAAATTAATGATGAAAGAGGAGAAATTTGAAATTATACTTCTTCCAAAAAAAAATTCTAAAACCGATTAAAGTGTGTGGCACATTAATTAGAAACCTCTTTCATTATTCGTAGTGCAAACACCCATTAACTAATAAATTAATGAAGAATAAAAGCATTAAGGTATAAAATTAATGCA


Gene Sequence:
>Vu_25315(+)
AAGAAAGAGAGAACTGAATAAGGAAGAGTACAAAACACACACAACATTGGTTTTAGAAAACATTGAAATTGAAGAAGTGAAAGGGGGTGTAGTGTGTGGGCGCTACTACCGTTTCGTTCCCTTTCTCTCTCCTACTTCCTCTCTTCACTCCTCATCACACTTTCTCTCTCCACACACATCCCAATGTGATGTCGTTCTGATCTTCAATTTCCATTTTCCTATTCTTCTTCCCAATTCACGCTTCGCTTTTCCCCAATTCTAATCATACTTCCAATTCTCAGATTTTACGATTCTGCCCCTCGCTCCGATCCGAGGCTTGTCTCCCAGGGCTCCTCAAAATCAAACACAAAACACGAATACGAGTTAAACGCGTCGTATTGTGACCTTCGTCGCTTTCGGTAACAACGTGACTGAATTTGGAATTAATTTCGTGTCTTTTTGTTTGTTTGTTTTGATTTCGGGAACAGGGTTTTCACTGTTTCATTCAGCTTCCGAGCTCAATTGGCGCTCCTATATTCGCCGCGCGCAAAACGAGTCGTTTTGGATTCTAGTGTTGCGTCGCGTCGTATTCAGGTATCGTCTCGTAGCGTTTCTGTTTTATTTTATTTTTATTTTATAGTTTTTCTGCCCTTCTTGTTTTGTTTTCTTGCTGGCCTTAATTTGTGTGGTGGGATTTTCCGATCCATTGTTAAATATTCAGGTTAAAATCAAAAGAATTACACGTTCTTTGTTGTAAAGAATTACAGACAAATACTGTCACAATCAGAAACCCCAACAAACTTTGAAAGACAGAATCGCAGTTCGTAATAGATAACGAAAGTATATATAAATGTATTTTCCGTTTAATTTTTATTTTTCTCAATATTGTAATAACTGGTCAGAATCGCAGTTTTTTTTTTTAAACATTTGGCTTAATTAATAACAAAGTATTAAATGAAAAAAGTTTCATTTTTTTAATCTTTGCTTGGGTTATTATCAGTTAATTTGCTAATTTTGTAATAAATGGTCAGAGTCGATGATTGTTTTTGAAGCTTGGGCTTAATAATTGACGGAAGTATTATATGCATTTACTCTTTGCTTGCTTGGGTTGTTAATTATATATTGTCATAAATGTGTACTTTGTTGTGGTGACCGGATTTGGGGTGTTGGGTTGGTGGGAAGAATGAATTCTGTAATAAGTGTGCATGCTTGGTCTTTGTGGGTTTTGAGGGATGAAAATTATGCTGTGTTTTTTCGTGTGCAATGATCACGTGATAAGTGATTGGGTATATTTGATTCCTGATCGGGTATTATGGGTAAGCATGATTAGTATCGTGCTTAAGTGGATTGTGATGGGTTATTTCGCTTTTTATTGGGTCTGGAAAATTTGCATTTCAATATTCAGTGCAGAGCATCATTAAATACTCGGAGTCAGGTTTTGATGAAGTAGAGAAACTTTGCTATTGGGTATTTATGCTTTTACTACTTTACCCGATATAATATGATGCTTGTGATTATTTTCATTTCAATTTATTTACTGTTGTAATTCCTTTTTAGCTTTTAAAGTGTCTTCATCATAAAGAACATTCCTTGTTTTCTGTGTCGTGTGAATCATTTAATGGAATTCGGCTCGTTTTATCTTGATGAGGTTCGATGCTCCTTCCCCTGTGCAAAAGAGATATCTGAAAGTAAAGGAATAAAAATAAAGGGATGTGGAGCAGGGACTTTTCTTGGTTTTACACTTTTTCAATTCTGTAAATTTTAAGGATTTCCTTCGTGGTTGTGAAATATTTGGGCAGGAATCATAAAATATAAGATGGGACGAGTGAATAATGAAATTGAGGATGAAGTGCTTCCCAGTGATGTGAGTGCAGCACAGTCAAATGGTGAGAGTTATGAAGGAAGTACCAGTGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAAAATGGGGAGGGGAATTGGAATGCAGTTCAGAAGCACACAGGGTTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAAGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATGTAAGCATTTTTTATATAATTTGTTTATATGCCTTGTGTATGTAGTTGTAATTTTTTGAGGTTTTTCTTGAAATATTTGAATTCTATTCTTTATTAGTGATGTCACCGCTGTAATGTCTAGTATTGTATCGAGGAAGTTCTATCTGTGGAGAGTTATCTGCAAATAGACTATAATCTGACGTAGGGGTCTACTCTAACCAATGTGGTAGAATACAGTTTACATGTCTTTTGTTAGATTTCCAATTTTATAACATCGCTCATTCTGTTTAACTGTTATTTAACGGTGTAATAAGTTTGTATGTCAACCTTTTGGCAATATAAAGTCTTACAATATCTTGTAAGCTTTTTTCTGGATATTATCGGGCATGTTAAGGAAGTTGAATAACCATTATTGGTAACATGGGAGACATTTATTTCAACGCAGTTGTTAATTTTATGTGTTTGTAAGTGATTTGTAATTCTATTACATCTACAACTTCAATTTCAAATTATGTTAGTAATAATCTTACATATTAACGTAATAGAATGCGTCATGGTAACTGTTCATTTTTAAGGGTTAGAAGGTTGCCCGTGTCACATTCTATTGGATGTTGTTGGATTTGTGCCCCTTGACCAGGAAAAAAAAGAGTCTAATATTATCATGCCAAAATAGAGAAAAGACAATTGTATTAATATAGTAAACTTGTTCAGTTGATAATGGATAAGTGCGAACTTCATCATCTACGTTAATCATAGTGAACTGGACTGTAACTCATTCATTTTTAGGATTAAATTAATTGCAAAGAAACTCATTGCTTTTGCTTTTTCTTAATTCTCACGGCTTTCAAAATTGAGGGGTTTAAATTATTCAAGCTTCATGAGTACATATCTTAGTATTTTTCTATTGGAACATTTGAAGTATGGCCATCATTCAATGCGTCTAAGTTTTTATTATTGTCGCAATCAGTTTCTTCTACAATTGTTTCGTCTCAATATTATTAGCCCTTTTTCCTCAATCTGTTATAAACGTTTAATTTCTTTTGCTTGTAGTTGCCTGGTCGCACCGATAATGAAATAAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAGCGGGCTGGGTTGCCACTTTACCCTCCAGAAGTGTCTTTGCAAGGTTTTCAAGAGAGTCAGCGTAACCAAAGCAATGGTGGACTTAATGGTGGCAATAGAATGCATCTTGATATGTTGCAGAAAAATAGTTATGAGATACATGGTGCTATATTTGATAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCTAAGTTTTCCGATGTTTCTGTTTGTGGCAATATGCTGAAAGGTCTTGATTCTTCTTCTCAATATTGTAGCGTTATGCCACCAGCATCACCTAAGAACAAGCGTCTTAGAGAGTCAACAATACCGTTTAATGGTTCCAAGGATAAGAAAAACAATGGTCTATATCCATTTTGTCAAAATCGGGACAATAATTCTGATAAGATTGCACACTCATTTGGAATGCAAACACTCCTTGATCCTGGTCCCTCCTCACACAACTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTCATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCCATGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCATACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAGGAACCATTGTTCTGACAAAGGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGTGACAACTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCCGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTATAGGCAGTGAGAATTCATTGGACGAACAGCTATCTCTCCAGACATTTACTGGTTAGTAATTTTCAATGTGCTATGGGGAATAATTATTGAGAACATTTCACATTTTATAAATCTTCACACACTTCTTTGGCATAATCTGAAATTTCTTAATTATTTTGGAGATTTCATGTTATAGTATGAGTCCTTAGGTACTTGGTAATACTTGTTTTATATGTTGGAGTCGGTACATCACTTTGAATTCATTTATCAGTTTTAATGAAACGACGCATGTTAGGTTTTCCTTAATTCCTTAATTCATGTGCAGGCAATATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCGGACAATGAAAATCAAACCTTGTCCTTCTTGAATATCACTCGTCCAGACTTATTGTTTGCTTCAGATTGGCATGAGCTAGGTTTTGGGCATGGCAAGAACCAGGCCATCACAACTGATACAACAACGACCCTTCTTGGAGACGATTTTGCCGCTGACCATAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCATCGGCAGCCAATAATATGCATGCCCTCTGTCACCTATCCGATCTTGGTTAAGAACACTTCATAGATGTGTGATTCTTTTAACAAGATTGTCCAATGTCAATATTTTCTGGACTGAAGAAGATTTTATGAGTGTGATTTATAGTACCAACAAAAGGGTCAGACTAATGCTTTCTTATGGCTTTGTCAATTCTTTTTGGGTGTTGCATGCATTGTATACCATCATGAATCTTGTGGACACAAATGCTTTTGCAGATTCTGATTAAATTGTTTAACTGCATTGCAGTTGAAACATTGGAATGC