Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25531 LG6 22967841 22968640 NAC domain-containing protein 78
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of flavonoid biosynthetic process, positive regulation of transcription, DNA-templated, response to high light intensity, regulation of flavonoid biosynthetic process, positive regulation of transcription, DNA-templated
Cellular Component   located in   cytoplasm, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/C 22967900 missense_variant p.Arg146Gly
G/T 22968018 synonymous_variant p.Ser137Ser
C/A 22968062 missense_variant p.Ala123Ser
T/C 22968105 synonymous_variant p.Thr108Thr
G/T 22968115 missense_variant&splice_region_variant p.Pro105His
G/A 22968129 intron_variant
G/A 22968181 splice_region_variant&intron_variant
G/A 22968192 missense_variant p.Ser102Phe
G/C 22968197 synonymous_variant p.Pro100Pro
C/T 22968222 missense_variant p.Cys92Tyr
A/G 22968231 missense_variant p.Phe89Ser
A/G 22968240 missense_variant p.Val86Ala
C/T 22968250 missense_variant p.Val83Ile
A/G 22968269 synonymous_variant p.Thr76Thr
T/C 22968286 missense_variant p.Met71Val
C/A 22968312 missense_variant p.Arg62Leu
T/C 22968329 synonymous_variant p.Lys56Lys
C/T 22968333 stop_gained p.Trp55*
T/A 22968342 missense_variant p.Lys52Met
C/T 22968354 missense_variant p.Arg48His
G/A 22968359 synonymous_variant p.Ser46Ser
C/G 22968362 missense_variant p.Lys45Asn
T/G 22968368 synonymous_variant p.Gly43Gly
A/G 22968423 missense_variant p.Met25Thr
G/A 22968430 splice_region_variant&synonymous_variant p.Leu23Leu
C/T 22968437 splice_region_variant&intron_variant
T/C 22968442 intron_variant
T/C 22968471 intron_variant
G/A 22968509 intron_variant
G/T 22968523 intron_variant
A/C 22968526 intron_variant
G/A 22968538 intron_variant
C/T 22968547 intron_variant
G/A 22968557 intron_variant
G/C 22968599 synonymous_variant p.Leu14Leu
C/T 22968607 missense_variant p.Glu12Lys
C/A 22968614 missense_variant p.Lys9Asn
C/T 22968618 missense_variant p.Arg8His
T/C 22968640 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25531.1
MFYLNLKRKITENLSRYDHIAVLKMKDLEWYFFSVMDHKYGNGSKSNRATEKGYWKTTGKDRLVAHGDRTMGMKKTLVYHAPVLSVIDFHLCQVQLPPIPTSPWPGPTSERNFGLFKPDGSIAYDIGFKGLTSSSTSSFLSFKGVRSLYVMVSASCAAFLLVAL*


CDS Sequence:
>Vu_25531.1
ATGTTCTACCTGAACCTGAAGCGCAAGATCACCGAAAACCTCTCCCGATACGACCACATCGCAGTGCTGAAGATGAAGGACTTAGAATGGTACTTCTTCAGCGTGATGGACCACAAGTATGGAAATGGATCCAAGAGCAACCGCGCCACCGAGAAGGGCTACTGGAAAACCACTGGAAAGGACCGCCTTGTGGCCCATGGCGACCGCACTATGGGGATGAAGAAGACTCTCGTGTACCACGCCCCTGTTCTTTCTGTCATTGATTTCCACCTCTGCCAAGTTCAACTACCACCGATTCCCACCTCTCCTTGGCCTGGTCCAACATCTGAGAGAAACTTTGGATTGTTCAAACCAGATGGTAGCATTGCTTATGATATAGGTTTCAAAGGACTCACTTCATCATCAACCTCCTCCTTTCTTTCCTTCAAGGGTGTTAGATCTTTGTATGTGATGGTTTCTGCAAGTTGTGCGGCTTTTCTTCTTGTAGCATTATAA


Promoter Sequence:
>Vu_25531::LG6:22968640-22970640(-)
TATAATTGACCTTAAAAGTAATTGTCATAATTGAATACAACCAATTTCAAGACCTTGACTCCCAAGAGGCTAAGAGTGAAATTATGTAACCCTTTTCCTACGAATGTTTACTTATTCACACTTCGTTCCCAGCTACTTTTACTGTGTTTAGTCATGCGAATATCATAATACATTTTTAAGTTTACTTGTGATTTATAGAAAAAGAAATTAATATTCCATACTTAACATGCTAAAAAGAATATGATATGATATGATAAAAAATATATATTATAGAGAAAACCATTAAATAATAATCAATTTTAGAGATAAAAAATAATTAATTACTAAATTCATTGATTTAGATATCAATTTATAAAAAAAAATTATTAATATCTAAAATATTCTCTATTATGAATAAAACATTATAATTATTTTGTGAATTAGAATTTAAATTAGTTTTGAATATTAACTACAAAAATTTTAGTTACCATGGTTCTAAAAAAATAAATTAGACACTAATTTCTCGATAGCTAATGATAATTATAGAAAAAAAATCATATCTATAAAAAAGGCTATGAATGAAATAATGAGTATAAGTAAGATGAGTTAAAAATAAAAAATTAAAATAAAATATTACTAATTAATCTAATTTTCCAGTAATGATAGAAAATGAACTAAAAATTTAAAATAAGACAAATAAAATGGGCAACCACTAAACCAAAAAGTTATAGATGTGTGTATATAAAAATGTGTTATTATAGATATCTTTTGTTTGGACTTTTATAACTCTAAATGGCAAGTGAAGGATTTTTTTTTCTCCTGACAACATTTCTTGTGTTGATCATTGTTGCCGAATTTTCCAAGGTTGAAAGGGTATTGACGTGTAAATGTATTTTTGGCGAGCTTAAGAATATGCAATGATAACATAACAATAAAAGAAATCACTAGTACAATTTTTTCTTTTAAATTCGCACAATATATCTCATTTTACACCAAACCGCTGTCTATCACAAGGCGGTGACAGTTTTGTAATAAATCGGACCTTATAGGCCTCGGTTGCATGCAGAACCGATGCAAAACAGAGATACAACCTCGGTTGCAAGCAGAACAGGTGCCTAAAAGGTGTCAACTTTATGGAAAAGTGATACTAACTCAGGCTTTTTGGCTGACAACTTTATGAAAAGGTGATACTACCTCGGTTTCCCGCAGAACCGAGGCATAAAGCCTGAGCTGCCACCTCGGTGAACTTAGACCCGGTGCCAAAACAATCATCGGCTTCGATTCCTTTCTAACCGAAGCATATAAGCTTCAGATTTTTCATTTAAGCATCGTTTCGTTCATAACCGGTGCTTTAGAGCTTCAAAATTCTCAGAGTTTGTTCATTTCTTCTCGCACTGCTGCTGCTTCTTCTTCTTTCTCTTCGCGCTGTTCATTGGTTGTGTTCACTGCTTCTTCATTCTTCTTTGTGTTCATTGCTTCTTCTTTCACTTTAAGCTTCCTTGCGTTCATTGCTTCTTCGGTTCTTCTTCTTCGCGTTGCTGCTTCATCATTGCTTCATTGCTTCTTTTTTGCGAATCCACTGTTCCACTTCTCCCTCTCACGACTGAACGTCCTCTCTTCTCACCTTCACTGCCTCCAGCGTCGTCGTCCAACGCCATCGCCGTCTCCGCCGTTTGTCGACATCGTCGCCACATACTATTCTCACTGCCACCGTCTCCCTCTTCATCAATCATAAACGAAAGCCCTAATCCCCAATTTTCTTTCACTCTTTTTCTCTCTCAGCGATTCATCTCTTTTGAATCCAATCCATGGCACCTATGGGTCCCGGTTTTCGATTCCACCGCACCGACGAAGAGCTGGTGGTGTTCTACCTGAACCTGAAGCGCAAGATCACCGGAAAGCTCTAATCCCCAATTTTCTTTCACTCTTTTTCTCTCTCAACGATTCATCTCTCTTGAATCCAATCCATGGCACCTGTGGGTCTCGGCTTCTGATTCCACTGCACCGACGAAGAGCTGGTG


Gene Sequence:
>Vu_25531(-)
ATGTTCTACCTGAACCTGAAGCGCAAGATCACCGAAAACCTCTCCCGATACGACCACATCGCAGTGGTATATGTCTACAAGCTCGAGCCTTGGGACCTTCCCCGTTAGCATTTTTCCCTTTTTTGTGGTGTCGAATTATTAGCAATAGGGTTTGGTTCCAAGGATTCAAAGTGTTTTTTAACTTATTTTTGCTTTTCAACTCTGTCGAAGCTGAAGATGAAGGACTTAGAATGGTACTTCTTCAGCGTGATGGACCACAAGTATGGAAATGGATCCAAGAGCAACCGCGCCACCGAGAAGGGCTACTGGAAAACCACTGGAAAGGACCGCCTTGTGGCCCATGGCGACCGCACTATGGGGATGAAGAAGACTCTCGTGTACCACGCCCCTGTTCTTTCTGTCATTGATTTCCACCTCTGCCAAGTTCAACTACCACCGATTCCCACCTCTCCTTGGGTACCCCTTATAGGCCTAAGATGGTTGTGAGAGCTTATATTTTTGCTTTGTTTAACGAGAATTTGAAGCCTGGTCCAACATCTGAGAGAAACTTTGGATTGTTCAAACCAGATGGTAGCATTGCTTATGATATAGGTTTCAAAGGACTCACTTCATCATCAACCTCCTCCTTTCTTTCCTTCAAGGTATGCTTGCTATTACACTTTGTATTATTCATGAATTTTTACCTATAATTTGTAGAAAGTGATGGTGATGATGGAGAAATTATGCATTTGCAGGGTGTTAGATCTTTGTATGTGATGGTTTCTGCAAGTTGTGCGGCTTTTCTTCTTGTAGCATTATAA