Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_25675	LG6	25617207	25619222	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, defense response to oomycetes, protein phosphorylation, defense response to bacterium, defense response to bacterium, defense response to bacterium, defense response to oomycetes, defense response to oomycetes, protein phosphorylation
Cellular Component	is active in	plasma membrane
Cellular Component	located in	extracellular region
Molecular Function	enables	transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
C/T	25617380	synonymous_variant	p.Phe58Phe
G/A	25617536	synonymous_variant	p.Ala110Ala
T/C	25617656	synonymous_variant	p.Asp150Asp
G/T	25617680	synonymous_variant	p.Gly158Gly
G/A	25618082	synonymous_variant	p.Val292Val
T/C	25618137	missense_variant	p.Phe311Leu
G/T	25618147	missense_variant	p.Arg314Ile
A/T	25618152	stop_gained	p.Lys316*
G/T	25618182	missense_variant	p.Asp326Tyr
G/A	25618361	synonymous_variant	p.Lys385Lys
T/C	25618407	synonymous_variant	p.Leu401Leu
G/A	25618562	synonymous_variant	p.Lys452Lys
T/C	25618574	synonymous_variant	p.Asp456Asp
T/C	25618925	synonymous_variant	p.Cys573Cys
G/T	25618930	missense_variant	p.Gly575Val
T/A	25618931	synonymous_variant	p.Gly575Gly
C/A	25619156	synonymous_variant	p.Pro650Pro
T/C	25619210	synonymous_variant	p.Thr668Thr
A/G	25619221	splice_region_variant&stop_retained_variant	p.Ter672Ter

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_25675.1

MSNLLISSLLLTTNLIFLTSVSSTEFIYNTNFNSTNTLIYGNATIQSSILTLTNSSTFSVGRAFYPFKIPTKSSNSSTPLPFSTSFIFSIAPFKGLLPGHGFVFIFTPSAGTIGVSSAQHLGLFNLTNNGDPNNHVFGIEFDVFDNQEFDDIDENHVGVDVNSLVSFASHAAGFWGGNDGDRFEDLKLNNGENYQVWIDYLDSRVNVTMALAGQKRPKKPLISELVDLSEVLLDEMYVGFCGATGQLVESHKILAWSFSNSNVSIGDALVTTNLPSFVLPRESILRSKGFVVGITIGVLFVIGSAVVMFVFFLRRKRSKRKEEEEDIEDWELEYWPHRVRYEDIYAATKGFSDQNVIGFGGNGKVYKGLLQGVQVAVKRIPYDSKHGMREFLSEISSLGRLKHRNVVPLRGWCKKEKGSLILIYDYMENGSLDKRIFDGDENTVFGWEERVKVLKDVAHGILYLHDGWEVKVLHRDIKSSNVLLDKDMNGRLGDFGLATMHHHEQIGHTSQVIGTVGFMAPELVHTGRASTQSDVFSFGVLVLEVVCGRRPNEENKPTLVVWLMGLMERGEECCGLDERLKGRSECECKIDEVKRVIHLGLLCTHPDPHVRPSMRQVVKVLEGEDLDGSLVEKINSAAEYVGSFGNSIHPTIQDIFASHFSYSTVCDTEGR*

CDS Sequence:
>Vu_25675.1

ATGTCAAACCTTCTCATCTCTTCCCTTCTTCTCACCACAAACCTTATCTTTCTAACCTCAGTTTCATCCACAGAGTTCATCTACAACACCAACTTCAACTCCACCAACACTCTTATCTATGGCAACGCCACTATTCAATCTTCCATTCTCACCCTTACCAATAGCTCCACCTTCTCTGTGGGCCGTGCTTTCTACCCTTTTAAGATCCCCACCAAATCTTCCAATTCTTCAACCCCTTTACCTTTCTCAACCTCCTTCATTTTCTCCATTGCTCCGTTCAAAGGCCTTCTCCCTGGCCATGGCTTTGTCTTCATATTCACACCTTCTGCGGGCACCATTGGGGTGAGTTCTGCTCAGCATCTGGGCCTCTTCAACTTAACCAACAATGGTGATCCCAACAACCATGTCTTTGGCATTGAGTTTGATGTGTTTGACAACCAAGAGTTCGATGACATCGATGAAAATCATGTGGGGGTGGACGTAAACTCTCTTGTTTCTTTTGCTTCCCATGCTGCTGGATTTTGGGGTGGGAACGATGGTGACAGGTTTGAGGATTTGAAGCTTAATAATGGTGAGAACTATCAAGTGTGGATTGACTATTTAGATTCCAGAGTTAATGTTACGATGGCTCTTGCAGGCCAAAAGAGACCCAAGAAGCCTTTGATTAGTGAACTTGTGGATCTCTCTGAAGTGCTTTTGGATGAAATGTATGTTGGATTTTGTGGGGCAACAGGGCAGCTAGTAGAGAGTCATAAGATTTTGGCTTGGAGCTTCAGTAACTCAAATGTTTCTATCGGTGATGCTTTAGTTACTACAAATCTGCCTTCATTTGTGCTTCCCAGAGAATCTATTCTTAGGTCAAAAGGTTTTGTTGTGGGGATCACTATAGGTGTTTTGTTTGTCATCGGTAGTGCAGTTGTAATGTTTGTGTTTTTTCTCAGAAGAAAAAGGAGCAAAAGAAAGGAGGAGGAAGAAGACATTGAAGACTGGGAACTAGAGTATTGGCCACACCGTGTAAGATATGAGGACATTTATGCTGCAACTAAAGGATTTTCAGACCAAAATGTAATTGGGTTTGGAGGGAATGGAAAAGTGTATAAAGGGCTTCTCCAAGGAGTGCAAGTTGCAGTCAAAAGAATTCCTTATGACAGTAAGCATGGAATGAGAGAGTTTTTGTCTGAGATTTCAAGTTTAGGCAGGTTGAAGCATAGGAATGTGGTTCCATTGAGAGGTTGGTGTAAGAAGGAGAAAGGGAGCTTGATTTTAATCTATGACTATATGGAAAATGGAAGTTTAGATAAAAGAATATTTGATGGTGATGAGAACACAGTTTTTGGTTGGGAGGAGAGAGTGAAGGTGCTGAAGGATGTAGCTCATGGTATATTGTATTTGCATGATGGTTGGGAGGTTAAGGTGTTGCACAGAGACATCAAGTCAAGCAATGTGTTGCTTGATAAGGATATGAATGGAAGATTGGGGGATTTTGGACTTGCCACAATGCATCATCATGAGCAGATAGGTCACACATCACAAGTGATTGGAACTGTTGGTTTCATGGCACCAGAACTTGTTCATACAGGGAGAGCCTCAACTCAGAGTGATGTGTTCAGCTTTGGAGTGTTGGTTTTAGAGGTGGTGTGTGGGAGAAGGCCAAATGAGGAAAACAAGCCAACCTTGGTTGTTTGGTTGATGGGGCTAATGGAGAGAGGAGAAGAGTGTTGTGGTCTTGATGAAAGATTAAAAGGGAGAAGTGAATGTGAATGTAAGATTGATGAGGTTAAGAGGGTTATTCATCTTGGTTTGTTGTGCACTCATCCTGATCCTCATGTTAGGCCAAGTATGAGACAGGTTGTGAAAGTGCTTGAGGGAGAGGATTTAGATGGAAGCTTGGTTGAGAAAATAAATTCAGCAGCTGAATATGTTGGGAGCTTTGGTAACAGCATTCACCCCACAATTCAGGATATTTTTGCCTCCCACTTCTCTTACTCAACTGTGTGTGACACTGAGGGCAGATAA

Promoter Sequence:
>Vu_25675::LG6:25615207-25617207(+)

ATAAAAGCTTTGGTGTAAAACTCAAATCATTATAGTGAAAAATCCTTCAATCTAAGGTTGATTGGAAGGGAAATTGGATGTAGGCATTGAGGTCAAACTAATATAAATCTTTTGTTTGTATTTTTCTCCTTATCTCTTTTACTTTCACTACATACACGTCTTACTTAGATTACAAGAAAGGTTAAAGATCATTCTAGGTTTGCGAAAAGATTGAAAAAACATTTGTTTTTATTATTCACCAATTCACTCTCTCTTGGTGTTGAGAAACAAGACACTTCATTTCTAACATTTTTAATTGGAGAAAAAGTATTACCTTAATCCAACCCAAAAATTCGTGTAACCTTTGGTCGCAAGACGATTTTTTAGACTATCCATAATACCATCATGACCAAATTTGATAGCAAAAGCTTACATACAACCAATAATAGATTTCTCATACAATAATGACACAAGCTTCCAAGTTTCACTATTCTTCTTTAGAGTGCTTAGTTTAGCATGGACAAGCCAATTAAAATGGGCTAAGTCATCACAGCAATTTTTTGAAATGATCATAAAATAAATAGATGAAAGACAAATAATGTGGATCAATCCACTTCGTCCCGTTTCAGATCCACACAAGCTACAAATGATAGAAAACAAACTTACGTGAATCAGCGAATTCAAAATCTCATTCTACTCTACGCTTTTCATCGATTTGTCTAACCCGTCATATCTAATGTTAAGTATTATTATTAATTAATAATTATACTTTGTATTACGTTATTGTATTTGTTGGAGTTGGAAGAACTCCATAGTCCAACCTGTCTGTGCTGTTTCCCACACAATATTCATCTAACATGTATTAAAGCCTTTAATAAACTAATCAGTTTGAGGATAAACTTTTTAAGTCTCATAAATCACAATGACGACTCATCCATGTGGTGATGCATGATCTGGTTTTAGCGTATTACCAGTAGCAACATCCAAGAAAGCAAGTTCAGTATTTTTCTTTTCTTGTTTTTCCTCCTCTTTTCTTTCTTCATTTTCGTAAAAAGCATACTATGTAAGATTAAAATAAGTTTTGTTCCCCTTTTTAGATATTAGAAGTTAATTAAAAGAAAAAATATATTATTATTATTATAATATGTTGATGGTGTAAAACATATTTCTTAAAAGATACTCCTAGAAATATGAACGATTTCTAACCCTTGTGTTTGGTATACCATCGCTGAACAAAAAATGGTCAATTTTCCGTTTTTATATACCCTGTTTGGAGGGGCAAGGTAAAAAAAGCTGTCTTGGTTACATGATTATTTCGGAATGTGCTTTTTCCACTTTGATAGTTTGTATTATAACATTGAGCCAAAATCAAATTGAACATCCAACAGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCAAGTTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCACGTGTTCGATCCACGTTCACCGCAAAACTCTTTTTCTCACAACCTTTTCCTAATTTTACTGCAAATCCATCAATTCTCTGTCAAAAAAAGCTTGCACCAGCCGGGAATCGAACCCGGGTCTGTACCGTGGCAGGGTACTATTCTACCACTAGACCACTGGTGCTTCTTTAAGACATTATTTCCGAATTGTTTTACATAATCTTACCTATAATTTTCAATCGGCTAAAATATCTTGTGCAGTGCAGCTAAATTGATCAAATTATCAAAAAATTTGTCAACTTTGACCTTCGTCGTAAATGGCAGCAGATTTTTTGGACCATTTTGATAATTTCTTGGAAGGAACACATGTCTGCAAACTGAAACATTCTTCTTTGGAGGTGAAGAAACACCAAAGAATCAAATGGATAAGTAAAAAACATTTTTTAATATGTTAAGGTTACCCTTCCTTTGATCACTTTCATATTTGTTCTTAGAAACAAAATCTTGTCAAAAGATCTCTACCATCTTCCA

Gene Sequence:

>Vu_25675(+)