Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_25980	LG6	31291639	31292253	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	31291717	synonymous_variant	p.Gln179Gln
G/T	31291887	missense_variant	p.Leu123Met
T/A	31292033	missense_variant	p.Asn74Ile
G/C	31292049	missense_variant	p.His69Asp
A/T	31292151	missense_variant	p.Phe35Ile
G/A	31292155	synonymous_variant	p.Arg33Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_25980.1

MGSHVVDGCGEFMASGEEGTLESLRCAACECHRNFHRKEVDGELQPQQPPPLLLVQQQQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLHHHRLVGSSGTPSLVPLVMMAFGGLAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM*

CDS Sequence:
>Vu_25980.1

ATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGCGAAGAAGGTACGCTGGAATCACTAAGATGCGCCGCGTGTGAGTGTCACCGCAACTTCCACAGGAAAGAGGTTGACGGAGAGTTACAGCCACAACAACCACCGCCACTGTTACTGGTACAGCAACAACAACAACAACAACAACATGTTCCCAATTATCACAGCTACTACCCCAACAAGCACAATGGGCACCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCATCATCACAGATTAGTTGGTAGCAGTGGTACACCGAGTCTGGTTCCCCTAGTGATGATGGCCTTTGGAGGCCTAGCTGAGTCCTCAAGCGAAGATCTGAACATGTTTCAGTCCAACACCGGAGGAGCACAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACATAATGAGCAGGAGGTACAGCAATTTTGTTCTCAAGCAGGCGTAAAGAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA

Promoter Sequence:
>Vu_25980::LG6:31292253-31294253(-)

GTGCCAACGAGTCTTCAGAAGTGTCGCTCAGCGATAAATGACGTTGAGCGGTACTCGTGGCTTCTCTTCTTTTGCACTTTTTGAGTTCTTTTCTGATTCCATCTCTGTCCTACTTCACTTCTTTCATCAAAATCATCCTAAAACCTGCATAAAACAAGGAAATCAAGCATAAACCTATCCAACTCTCTTATTTCCAAAATATAAGCAAAAACATGGTTCCAAGCTAGTTTCTAAGTCTTAAAGGTATCTTTTGGTATCACTTTTAAGCATAAAAATAACAGTTTTTTAACTGTTATCACCTACGCACCAATGTAGGACTTTTTGGTTCATCAAAATCGGGCCTACGCACCAACATAGGACTTTTCGGTTCACCAAAACTAGGCCTACGTACCAACGTAGGACTTTCCGATTCACCAAAATCGGGCCTACACAACAACGTAGGACTTTCTCGCGTCATCAACCATTGAGTACGTAAGAAAACAGATGATTCACAGTCACCCACTAACATGACTTCTCAAACAACACTTATGGAAACACAACTCAACATACATATGTTCCCCTCGACACACAATCTAATTAACTTAATTACTACACTCCGCAAGAATAACCATACTAATCATGCATTTGACCACTACAACTCACCATATAATTATCCCTACAACCAACACACATCGTGATACTTAGGCTCACAACATTGCAACCATCATAGATTTCCTAGAATCGCTTCAAAACATACAACAAGTATCTAACACCACCATACATCCGAAAACATCAACAACATATTAGAAAAATACTATAGTTTCTTATAAAGTATCGCGACACCATAAAAATCACTATGACTTCTTATGCAAGTCCAAAATATCAATCAAAATACATAAATCACATAATAAATATCAAACTACTTCAAATGTCATCAATAACTACTTATACAAATACACAATAACTTAATAATTTGAACACCATTCCAAGTGTCAGAGTGGCTCAACAGAATGGTTAACGCGTTCAACAAACCAAGAGGAGGTGAATTGGTTTCTTATCGCAAATCACTCTTTTAATAATTTTCTCAAATAAATATAAATTCCTTAAAATAATTTAAACAAATTAAAATAGTAAGGAAGAGAGAAAATTGCACAAGTAATTTTTATCCTGGTTCGGATCACAGAGATCCTACATCGAGTTGTTAATCTCAACTAAGAATTAACGCTTTACTTGCACAAACCAACAAACCATTACAATCACAAAGAAAGTAAACAAGTTGAAGCTTAATACACCTCTCTTGTTACAAGAGATGAAACTCACTTCCCCTATAACCCACAAGGGATGAACACCACCTCTGAATCTTCACAAAGGATGAACACACTAGTGCAGAAAGGGCTTTAGACGTCCGTTCTTTTGGCCTTTTGACGTCCGACCTACCCCCGACGTCTTTGTGGGTGACGTTACTCAAACGTCGGGGGTAGACATCGGACATCGGACGTGTATATAGACGTCCGATGTGTTAGCCCCGATGCCTATGTAGACGTCCGGCCCCTCCCTCCCCCAACGTCTCCTTAGACGTCCGACACCTCCCTCCCCCCGACGTCTACACAGAAGTCCAGGTGTATCACCCGACGACCATATGCCTGAATGGTTTTTTGCTAGGGTTGGCGTTGGACGTCGGGTTGTGCACTGTCGGACGTTTATAGACGTCGGACAATGCACTAACAGACGTCTACTGGACGTTTTTTTTAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGCCATTTCTGGTTTTAGTCCCTCTTTCAAAATAAGGTACAATTTGTTCCTCATTCTTTTCGAAACTTTGGTTTTAGTCCTCTAAAACTAACACCGTTAAAAGTTAGCTGACGTGGCTAACGGTAGACTGACACACGGTTTTTTTTCAAATGTTTCTCACCTTTTCTTCCCTTCTCTCTCTTCCTTCCATCTTCCACCCAATTTCATCTTTCACAGCATCCCGGGTTACGCAGCAAGC

Gene Sequence:

>Vu_25980(-)