Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_26698 LG7 12956335 12957828 protein NSP-INTERACTING KINASE 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, water transport, protein phosphorylation, meristem development, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane, plasma membrane, plasma membrane
Molecular Function   enables   protein kinase activity, protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity
SNP Position Effect Amino acid change
T/A 12956448 intron_variant
A/T 12956465 intron_variant
C/A 12956480 intron_variant
T/A 12956496 intron_variant
A/C 12956527 intron_variant
T/C 12956533 intron_variant
C/T 12956534 intron_variant
C/G 12956551 intron_variant
C/T 12956556 intron_variant
C/T 12956558 intron_variant
T/C 12956564 intron_variant
C/T 12956572 intron_variant
C/T 12956574 intron_variant
A/G 12956630 intron_variant
T/C 12956636 intron_variant
C/T 12956702 synonymous_variant p.Asn38Asn
A/G 12956713 missense_variant p.His42Arg
A/C 12956715 missense_variant p.Ser43Arg
C/T 12956725 missense_variant p.Pro46Leu
C/T 12956737 missense_variant p.Pro50Leu
A/G 12956741 synonymous_variant p.Leu51Leu
T/C 12956747 synonymous_variant p.Ala53Ala
C/T 12956752 missense_variant p.Thr55Ile
A/G 12956757 missense_variant p.Thr57Ala
G/A 12956760 missense_variant p.Ala58Thr
T/C 12956768 synonymous_variant p.Arg60Arg
T/C 12956771 synonymous_variant p.Ala61Ala
C/T 12956774 synonymous_variant p.Ile62Ile
A/G 12956786 synonymous_variant p.Ser66Ser
C/T 12956814 missense_variant p.Arg76Cys
T/C 12956816 synonymous_variant p.Arg76Arg
G/T 12956818 missense_variant p.Arg77Ile
A/G 12956851 missense_variant p.Asp88Gly
C/T 12956865 stop_gained p.Gln93*
T/A 12956868 stop_lost p.Ter94Lysext*?
C/T 12956891 synonymous_variant p.His101His
C/T 12957042 intron_variant
A/G 12957051 intron_variant
A/T 12957073 intron_variant
A/G 12957075 intron_variant
G/A 12957086 intron_variant
A/T 12957093 intron_variant
T/C 12957121 intron_variant
C/T 12957138 intron_variant
A/T 12957139 intron_variant
T/C 12957142 intron_variant
A/G 12957148 intron_variant
G/T 12957150 intron_variant
G/A 12957159 intron_variant
G/A 12957162 intron_variant
A/T 12957171 intron_variant
G/A 12957175 intron_variant
A/G 12957176 intron_variant
C/T 12957183 intron_variant
G/A 12957196 intron_variant
C/T 12957205 intron_variant
C/A 12957224 intron_variant
G/A 12957230 intron_variant
T/C 12957233 intron_variant
A/C 12957266 intron_variant
C/T 12957284 intron_variant
T/A 12957337 intron_variant
G/T 12957415 intron_variant
A/G 12957451 synonymous_variant p.Leu145Leu
A/T 12957475 stop_lost p.Ter153Tyrext*?
C/T 12957496 splice_region_variant&synonymous_variant p.Phe160Phe
A/C,G 12957502 splice_region_variant&intron_variant
A/G 12957503 splice_region_variant&intron_variant
T/C 12957510 intron_variant
C/A 12957550 intron_variant
A/G 12957557 intron_variant
G/T 12957569 intron_variant
A/C 12957594 intron_variant
A/G 12957606 intron_variant
T/C 12957613 splice_region_variant&intron_variant
G/A 12957633 synonymous_variant p.Arg166Arg
A/T 12957637 stop_gained p.Lys168*
G/T 12957642 missense_variant p.Met169Ile
C/T 12957663 synonymous_variant p.Leu176Leu
T/C 12957696 synonymous_variant p.Ala187Ala
T/A 12957768 synonymous_variant p.Thr211Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_26698.1
MRFPHTCSLRPEKAPPRHRLLATVSSPPIKEREERRRRTTNRTATSHHERRYELPQTPPVVLSPHRHRKVVASAQDVDHPCSNVGSSTMKRNGSNREAEGGTDERNREAEEAQTREMGRQRRRRREKSRECDIGRRIVTVLTTLSFISNQMVSLSPYIVDIQYLPRHRPKMSEVVHMLEGDGLAERWKASQRVDTTKFKPQESSSSDRYYDLTNDSLLSKPWSSQDPDESIV*


CDS Sequence:
>Vu_26698.1
ATGAGATTTCCCCATACCTGTTCCCTGCGACCCGAGAAAGCTCCACCACGCCACCGTCTCCTCGCCACCGTCTCCTCGCCACCGATTAAGGAAAGAGAAGAGAGAAGAAGAAGAACGACCAATCGCACAGCCACGAGCCACCACGAGCGCCGCTACGAGCTACCACAAACACCGCCTGTCGTGCTATCTCCACACCGTCACCGTAAGGTTGTTGCCTCCGCTCAAGACGTAGATCATCCTTGCTCCAACGTTGGGTCGTCTACGATGAAGAGAAATGGCAGTAATCGCGAGGCAGAGGGAGGCACAGATGAAAGAAATCGCGAGGCAGAGGAGGCACAGACGAGAGAAATGGGGAGGCAGAGGAGGCGCAGACGAGAGAAATCGCGAGAGTGCGATATTGGAAGAAGAATAGTCACTGTTTTAACAACTCTTTCCTTTATCTCAAACCAAATGGTAAGTCTAAGTCCTTATATTGTTGACATTCAGTATCTTCCAAGGCATAGGCCTAAAATGTCTGAAGTGGTTCACATGCTCGAAGGTGATGGACTAGCAGAAAGATGGAAAGCTTCACAAAGAGTTGACACAACCAAGTTCAAACCCCAAGAGTCATCTTCATCAGATAGGTATTATGATCTCACTAATGACTCTTTGTTGTCCAAGCCATGGAGCTCTCAGGACCCAGATGAATCAATTGTCTAG


Promoter Sequence:
>Vu_26698::LG7:12954335-12956335(+)
ACTATATTGCATTAAATGGATCAGATGTGGAAAGGCCGACAGCTACAAAGATTCTATGTGGTGCATCCCTTGGTCATGGATGGTAGATTCAGGTGAAAAATCCTATTCCTACTAGCGATATTATAAATTGGTAGTCCTCCTGCAACAATAAAAAGTGCAAGTACAAGTGTTAAACGTGTAAAAAAAATGAAGAATAACATATAATATAGTAATTAATAATAATTTTTTTTTAATAAACTAGATAATACACTAGTTTTGTTCCTTCAATTTTTAATGTAATGTATTTGTTGTGTTGGGATATTATAGTTTACTAGTTTTCTTTATTGAAATTAAAAATTTTAAATATTATATTATTTATTAATATTTAAATATGCTTTTATTAAGTAAACTCAAAGGAGTTTATGGAGCCTGCATAAGTTTATGTATACTTTCAATTTTGACACCCATATCTTATTGCATGCTTGGTTTATTGAAATTTTGTAGACCCCATCCTGATATGACATTGACTAGCTGGGGACATTAATTGAAAATTTCAATTTATTCATTAGTTTAACTCATTAATGCCCTTTTCAGATATTAGTTTTATCCTTTGGTTGTACTAGCCTATGGTTATTGTATGGTATTGCATTCTTAAATGTTGTATCCCTCATTATTTATTGTTTCTGATATCAAGCATTGTCTCCTTGGCAATAATATGGTTTAGTTGTGCTATAATATTGAAACAAGTTGTGCATCCATGTAGATTGCAATTCTTTTTTGTTCCAAAGCTTATAGTTAACGTTTGCATTAACTTTTGTTTTGTCTAAACTTTTTCTTCATCTTCTCATTATTACTCCTTTTTTGGACATTGGTTGTTGTAATTTAAGGTAATGAAATTTTAATTTGAGAAAGGCTATAAAAGAGGGAATACAAAGCTTTTATATCGCTCAAAGAAATCTTAGGAAGAACAATGATGATATCTATAACATTTTTTGCAACTATGTTAAATGATAACTGCATACATACTATTTCAAATTTTAATTTTTTCGACTGTTGTTCATATTGCAGCTCACTACACCTCATTTTCTACTTCATGGCAGGAACAAAGATAATTTGAGAGAAGATGTGCAAGAGTCTGAGCGAAAAAATAAAATATACTGAAAAGATAGGGTGTGATTACATGTAGCTTACATACTTGTAGGAAATCAATTGAACTATAACAAGTTGACTATGCTCATAAAGAGATAGATAATCTTTAGATACAATATATGTGATACAAAGAACTGAGAAGAATTGATTTCAATATTATACCAAAACTATGCTATCCCAATTCAATTTACAGTTCACTAGTACACTCAAAGGAATTGACATCGGTTATTTTTGACCATAGGCACCAGTTTTTCAACCGGTGCATATCTTGACGAGGTAAAAGGTCTTTTCGTTATGCCTCGGTTGTGAACCGAGTTAGTATCTCGTCCTATACTGCCTCTGTTGGGACTTGAACCGAGACAGTAGAGTGATTTTTATTTTTTTGTTTTGTTTTTCTGGCCAGACTTTATTCAGCTTATTGTCTCTTAGTAGGCAAATTCTTCCAACCCGCTGACTTGAAGTACATCTAAATGAAGTGATGAAAATCTTCACTCCAAGAACTCCAACTTCATTAGTTTTATCAACATCATTATCATCTTTCTGCACCTTGAATGCCGAGGAAAACAATCTATATAAATCAATGCCAACTTGACAAGCCATGATGCTGCAACTCTAAGCATGTGTCCTGTACAAAACAAAAAGAAAGTCATATTACACAGACTTCAGTTTCTCTGCAACCAAAACATTGTTGGCTTACTGCAACCAAAACCAGAAACAGACTTACTGTACAAAGCATCGTTGGCTTACTGCAACCAAAACCAGAAATAGACTTCAGTTTCTCTGCAAACCAAAACGCAAAAGAGACATATTACACAAAAGATTGATCTTTGCAAACCATTTTGCAACACAAAAAGACCCTTCAGAAAAATGGA


Gene Sequence:
>Vu_26698(+)
ATGAGATTTCCCCATACCTGTTCCCTGCGACCCGAGAAAGCTCCACCACGCCACCGTCTCCTCGCCACCGTCTCCTCGCCACCGATTAAGGGTGTGTGTTCAATTGGCCCAATTGCTTCTCGCCACTGCCAATCCAGCCCAAACTCAAAACGAAATTCCCCTAACTCAAAACCCTAACTTTCTCAATCCCAAAAAAACTCCAAAACGCGTTTCAATCCTTGCGCCATCGTCGTGTCCCGCCGCGCCTCCGCCTCAATTTCGTCGTGCTCCCGTCGCCTCCGCCACTGAGACGCCTACTGGCTGCGATTTCACATCCTCCTTCCTGCAACCAAAATACAACCAGAAAGAGAAGAGAGAAGAAGAAGAACGACCAATCGCACAGCCACGAGCCACCACGAGCGCCGCTACGAGCTACCACAAACACCGCCTGTCGTGCTATCTCCACACCGTCACCGTAAGGTTGTTGCCTCCGCTCAAGACGTAGATCATCCTTGCTCCAACGTTGGGTCGTCTACGATGAAGAGAAATGGCAGTAATCGCGAGGCAGAGGGAGGCACAGATGAAAGAAATCGCGAGGCAGAGGAGGCACAGACGAGAGAAATGGGGAGGCAGAGGAGGCGCAGACGAGAGAAATCGCGAGAGTGCGATATTGGAAGAAGAATAGTCACTGTTTTAACGTAAGGGCTACGACCTCGGTTATAAGCAAACCGGTGCCTAAACCAATTAACTGCTTCGGTTACAAAGCAAACCGGTGCATAAATCATTTTAAAAAATTTAAAATTTATATTATATGTCTCGGGTTACAGATAACCGAGGCAAAATCCGTTGGATTTTTTAGCTGACACGGGCTTTTATGCTTCGGTTGGCCTTCTAACTGAGACAATAATATCTATAGGCATCGGTTCCTATAGAACCGAGGCATATAACTACTAAATATTTACATAAATGCCACCGCGCTGTTATACGCTTCGGTTTCAGTAAAACCGAGATGTATATAGCGCGTTAAAAAAGCTTTTTTTTACTAGTGACGTTCTTGTCTAAAATTAAACTTTTAATTATGATAATAGTAGCAATGGGTGAGTTTGTTTCCCTTTATTCATCAGAACTCTTTCCTTTATCTCAAACCAAATGGTAAGTCTAAGTCCTTATATTGTTGACATTCAGGTAAAGAAAATTCATCTGGAGAAAAAGCTTGAAATGCTGGTAGACAAGGATCTGAAGAACAACTATGACAGAATTGAACTTCAGGAAATGGTTCAAGTGGCCCTCTTATGTACTTAGTATCTTCCAAGGCATAGGCCTAAAATGTCTGAAGTGGTTCACATGCTCGAAGGTGATGGACTAGCAGAAAGATGGAAAGCTTCACAAAGAGTTGACACAACCAAGTTCAAACCCCAAGAGTCATCTTCATCAGATAGGTATTATGATCTCACTAATGACTCTTTGTTGTCCAAGCCATGGAGCTCTCAGGACCCAGATGAATCAATTGTCTAG