Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_27820	LG7	39645563	39648491	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, response to salicylic acid, programmed cell death, defense response to bacterium, defense response, defense response to bacterium, defense response to bacterium, defense response to bacterium, protein phosphorylation, defense response to bacterium, defense response to bacterium
Cellular Component	is active in	plasma membrane
Molecular Function	enables	kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
C/T	39645807	missense_variant	p.Thr82Met
A/T	39645970	synonymous_variant	p.Gly136Gly
T/G	39645982	synonymous_variant	p.Thr140Thr
C/T	39646246	synonymous_variant	p.Asn228Asn
G/C	39646336	synonymous_variant	p.Ala258Ala
G/T	39646449	missense_variant	p.Arg296Met
T/C	39646570	synonymous_variant	p.Asp336Asp
A/T	39646785	intron_variant
A/G	39646796	intron_variant
C/T	39646800	intron_variant
G/A	39646833	missense_variant	p.Gly377Asp
G/T	39646915	synonymous_variant	p.Ser404Ser
T/G	39646916	missense_variant	p.Ser405Ala
G/C	39646920	stop_lost	p.Ter406Serext*?
G/A	39646927	splice_region_variant&intron_variant
C/T	39646934	intron_variant
T/C	39647089	intron_variant
G/A	39647100	intron_variant
T/C	39647146	intron_variant
G/T,*	39647153	intron_variant
T/A	39647154	intron_variant
C/T	39647329	intron_variant
A/G	39647356	intron_variant
A/T	39647448	intron_variant
A/T	39647698	missense_variant	p.Asn426Tyr
G/C	39647851	stop_lost	p.Ter443Serext*?
A/C	39648211	missense_variant	p.Lys508Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_27820.1

MVSCKPQHFLLALSFCWWTTCIHVSSEKHSLKPGEKLNSTTLLRSEKGYYFIKIVTSYLQIYGPKNENWTVWIGNRNQPVDTGSAVLLLNHSGVLKIESKDIEPIILYSSPQPSENTVATLLDTGNFVLQQLHPNGTNTTLWQSFDYPTDNLLPGMKLGVHHRSGHKWSLVSWLTNLEPSLGAFELEWEPTKTELIIKRRGKLCWASGNLGNGRLMQGTSYEIVSNENESYFSITTFNGELTRWVLLETGQLINRNGADNNVARADLCYGYNTDKGCQRWEDIPLCRHPGDAFDSREGYPNADMANNLENSSYGLSDCQDMCWRNCNCAGFKNYYDDGGTGCVFYHKNFTTGTNFASGGSKFFVLVNKPHHKGKKMWVWITVVSVVAALLVISAITLAIKKRKRRLEDCDRGKILDWTKRFNIIGGISQGLLYLHKMFTQEESMTNTSRIVGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIVSGRRNTSLYDVDQPLNLIGHAWELWKESAVHQLVDPSLSESFDLEEMKRCIHVGLLCVSQYAKDRPTMSDVISMLTKESSIVTLPQRPAFYLERDYSYKEVSYEELNTDSMEEITTSS*

CDS Sequence:
>Vu_27820.1

Promoter Sequence:
>Vu_27820::LG7:39643563-39645563(+)

ATATGAATCGTATGAAAAATGTGAAGTTATTGTAAATGAAAAATCTAGAAAATATAATAGTCCTTACTTTGATAATGCACGCTCGTCATCGAACGGTCTTCTACCGTTCGATTTTTCCCTGAAAATGACTTAGAATAGGAGTTCTTTCATTTGGAAAGGATTTTGCTTAAGAACGAGCGTCCTCTTGTGAAAGGCTAGGGTTGAGCGTTTGGCACAGCCTAGTGGTACCCAACATTCGTAATCAATTGAAGTTATATTAGTAACGCTCGGTTTTATATCCAGCGTTCGTTATAGGTAACGCTTAGTCTTATACTAAGCGTTCGTCCAAATCGGTGTTCGGTCTTATACCGAGCGTTCGTTCTAATTAGTGCTCGTTCATATACCTAGCGTTAGTCCTAAGTAGTGTTCGGTTTTATACTGAACGCTCGTCCTTATCTTTGATTCCTGAACGGACGTAAATAGCGTTCGTCCAAATTATTAGTTGGCGTTCGGTCATTGACTGGCGGTGTTGTCTCCTGAATTAAATCACTCTCGGTTTATTATCTAGATAATTGTGGTGTATCTATTCATTGGATTCGATCTCGAGTCGTTGTACTTAAATTATTTTAAGTATTATTCAAATCTTCTAGAATCAGTTCATTTAACTGATTTAAGTATTCGTAACGTCCATCAGCGGACAGGGGGTCGTTCATTTTGGTCAGAAACAAGGATTTCTCTGTACTGTGATAACGTTCGTCCTTATTTTGAAAAGGATGAACGCTCGTCATTTTATGAAAGTGGAATAAAGAATGAAAATGTGATTAAGAGGAAAAGTTACCATGTGCGAACGATATTTTAATTGAAACATTGAAAGTGGATTTTGAACGAGCGTTCCAAGGAGGAACGACTCTATGATTGGAATGTGATAAGTTGTGTAGTATGACCATGGTAAAGCTACTGATGGCTGTTCATCCTGATATTCCGTGAGTGCTCGTCCTCATGTAGAGGGGAGCAGGTCATGTGTGGGAATGGCAGGAGGTCCTAGTCCTTAGGAGTACTTTGGACTGATAGGGCTAACCTCGGGTGGCAGCTGTTGAGCGTATCCCAGTTATTACACCACCCGGGTGCACAAACGCCTGTAGATACATGGATTCATACAGTCCGGACGGTCGGTCTTGTGAGAGTTTGGATGATTTATTATATGCTTTGATATATTGTTATATGTCTTGTATGTTAATTGCATATGTTAAATTTTATATTGGTTGTATGAATTAAATTACCTAAGCTTACCCTTGCAATTCCTTGTGTTGTCTACTGGTTATGTACGTCCGTCTTGTCAATGCAATGATCATCCGTGTGGATGTGAGCAGGCGGAGAGGCGCTGCTTGAAGAAACGCTGGAAGAAGAAAATTTGGAGAACGACAGCCTAGTCGAAGTAGAGGTTAAGGCCGAGCCATAGAGCGCTCGAGAAGTTGTAGTTTTTAGTATATATGTGTAGCTTTTTGGGACGTTCGGTTATTTGGCTTTGTAAAACCGTTCGTCCTGAACATTAGTATATTGTAGAATTTTCTGAACTCTGTATCCGTTTACTGTTCGGTTTTTAATAGCTGTATTGCTTAAGACTGCACTGTTAATTCTGTAAATGTGATTAGTTCTAATTTATGGTAATTACTATATATTGGGATGTTACACTGTAGTTTAGTACAATTTAATATAGTTCAGTTCAGTCCAATTTAATAAAACAAAAAACAGTTTATTTCAGTTTGTTTGAATTATTTTATAATTCACTTTAGACAAATTAATTTTTAGTTCAATACAAAATTTTAGTAGTGTATAGGTGTATTTCGCCATACTCTTATATATTCTAGATGTACCATAAAACAAAGTGCAAAATTTACGGAATGCACTTGAAATTGAAAGCAGTTAACGAGCACCACTCGTTACTCCTAAATGATAAACGATGGTCCCTTCCCAGATCCAGGGATAGTAAACCTTGCAGTGTGAACTTTCAAACTCGAAGA

Gene Sequence:

>Vu_27820(+)

ATGGTCAGTTGTAAACCTCAACATTTTCTGCTTGCTTTGAGTTTCTGCTGGTGGACAACTTGTATCCACGTTAGCTCTGAAAAGCACAGTCTGAAACCTGGAGAAAAACTGAACAGCACCACCCTGTTACGTTCTGAAAAAGGTTATTATTTTATTAAGATTGTAACAAGTTACTTGCAGATCTATGGCCCCAAAAATGAGAATTGGACAGTGTGGATTGGTAATAGAAATCAACCTGTTGACACGGGTTCTGCAGTTCTGCTGCTAAACCACTCTGGTGTACTGAAAATAGAATCCAAAGATATTGAACCCATCATCCTTTACTCTTCACCACAACCTTCCGAAAACACTGTGGCCACCTTGTTGGACACGGGCAACTTTGTACTGCAACAACTTCACCCCAATGGAACAAACACAACTCTGTGGCAAAGTTTTGATTACCCTACTGATAATTTGCTCCCTGGGATGAAGTTAGGCGTCCATCACAGGAGTGGCCATAAATGGTCACTAGTTTCGTGGTTGACTAATTTGGAACCAAGTCTTGGGGCATTTGAACTTGAATGGGAACCCACTAAAACGGAATTGATCATCAAGCGAAGAGGAAAACTGTGTTGGGCAAGTGGAAATCTGGGAAACGGTAGACTCATGCAAGGCACATCTTACGAGATTGTCTCAAACGAAAACGAAAGCTACTTCTCAATCACAACTTTCAATGGAGAGCTTACAAGATGGGTGCTTTTAGAAACTGGGCAGCTGATAAATCGGAATGGAGCGGATAATAATGTTGCGAGGGCTGATCTGTGCTATGGCTACAACACAGATAAAGGGTGCCAACGATGGGAGGATATACCCTTATGCAGGCATCCTGGTGATGCATTTGACAGCAGGGAAGGGTACCCCAATGCAGACATGGCAAACAATCTAGAAAATTCGAGTTATGGGCTAAGTGATTGTCAGGATATGTGCTGGAGAAACTGCAATTGTGCTGGATTCAAAAACTATTATGATGATGGTGGAACTGGTTGTGTATTCTATCACAAGAACTTCACCACGGGTACTAATTTTGCAAGTGGGGGCTCTAAATTCTTCGTACTTGTAAACAAACCCCATCACAAAGGTATGTTTATCTTACAGAATTTCAAAACTTCCTAGTACTTCCTTTTTAATTTAGTTTATAACTTTCAAAGTAGCACAAAAGTTACTGATATTTAGCTTTATTCCCATGTGTTTGTGAATGCCGAATGGTTCATATGCAGGTAAAAAAATGTGGGTATGGATAACTGTTGTATCAGTAGTAGCTGCTCTGTTAGTAATCTCTGCAATTACTCTTGCCATAAAGAAAAGAAAACGTCGTCTTGAAGGTTGGTTATACATGTGAAATAAACATGGTTCAAGATGCTTTATTGAACTCAATCCCTTGATTTGATCCCAATCTTAATCATTCATATTTCAAACTAAACAGGGAAAAAAAGAAAAGGGGTGGAGACTAAGAATATGGCAGATTTAGCAGCATCAAATAGATTCTATGATGTCAAAGGCTTTGACGATGAATTAAAGATCAGACAAAATCTAAAAGTGTTTCCTTTTACAGTGGTATTGTGGGCAACAGAAGATTTTAATCCTGAAAACAAATTAGGTGAAGGAGGATTTGGACCTGTTTATAAGGTGATATGAAGCCAAGTTTTAATTTACTAAGAACTTTCTCTAATAAAGGTCTAATAATCCTTTTGTTGCCATTAGGGAATCCTTCCTTCTGGGCAAGAAGTCGCCATAAAAAGACTTTCAAAATCATCAAGACAAGGAATTGTGGAATTTGAAAATGAACTGGTGCTTATATGTGAACTTCAGCACACCAATCTTGTACAACTACTTGGATATTGTATTCACGAAGAGGAAAGGATTTTAATTTATGAGTTCATGTCAAACAAAAGCTTGGACTACTATCTATTTGGTGAGAATTATTTCTCAACTTAATTTTGCAATATGCTTCATGCTTGTGTAATTTAGGAAAGTCCTTTTGCTTTGTTACCTTTAATGTAGTATATATTCTCAGAATATTATGTTTCCTTTCCTTGAGAAGATTGTGACAGAGGCAAGATTTTGGATTGGACGAAGCGCTTCAATATAATAGGAGGAATCTCTCAAGGATTACTCTATCTTCATAAGTACTCGAGACTAAAAATAATTCATAGAGACTTGAAAGCCAGTAATATACTTCTTGATGAAAATATGAATCCAAAAATTTCTGATTTTGGATTGGCAAGAATGTTTACACAGGAAGAGTCCATGACAAATACTAGTAGGATTGTTGGAACCTAGTAAGCTTTCAAAATTATTTCTTTCCAACAAAATAATATGTTAATAAAGTTTGTATTTTCAACTGTGAATTACTTTTTCTTGTAGTGGTTACATGTCTCCTGAATATGCCATGGAAGGAATTTTTTCTACAAAATCTGACGTCTACAGCTTTGGAGTGTTGCTACTTGAAATCGTTAGTGGAAGAAGAAATACTAGCTTATATGATGTTGATCAACCTCTTAATCTAATAGGACATGTACGTGAAATTTCTATAAAAAGTGTTCTTTTTCTTAATATTATTTTCCTTTGTCTAATTTGTCTAAAATGTTGATAGGCATGGGAGTTATGGAAAGAAAGTGCAGTTCACCAATTAGTAGATCCATCATTGAGTGAGTCCTTTGATCTTGAAGAAATGAAAAGATGCATTCATGTGGGTCTCTTATGCGTGTCACAATATGCAAAAGACCGACCAACAATGTCTGATGTTATATCAATGTTAACAAAAGAAAGTTCAATAGTTACCTTGCCTCAAAGACCTGCTTTCTATTTGGAAAGAGATTACTCTTATAAGGAAGTATCTTATGAAGAGTTAAATACTGACTCTATGGAAGAAATTACTACTTCCTCTTGA