Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27902 LG7 42329521 42330438 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to other organism, signal transduction, defense response to other organism, positive regulation of transcription, DNA-templated, defense response to other organism, positive regulation of transcription, DNA-templated, response to organonitrogen compound, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, immune system process
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
C/T 42330008 missense_variant p.Thr163Met
G/C 42330009 synonymous_variant p.Thr163Thr
C/T 42330243 intron_variant
T/G 42330381 synonymous_variant p.Leu194Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27902.1
MASSKVVVSTNPDLPRDSSISPLSSLLLSDLHHSTSMDDLLKSITPSAAKTVDDVWKEIVAGAHPHHPAAAVSGDRNAATVNATAPEGYEAITLEDFLTKAGAVREEDVRGVLPPSSSLPFPLPLPAEGSSSSVEPFGNGVAPTNSVPKGKRRVVEEPVDKATLQKQRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENARLVNEEVRV*


CDS Sequence:
>Vu_27902.1
ATGGCGTCGTCGAAGGTTGTTGTCTCGACGAATCCGGATCTGCCACGCGACTCTTCTATATCTCCCCTTTCCTCTCTTCTCCTCTCCGATCTGCACCACTCAACCTCCATGGACGACCTTCTCAAGTCCATCACCCCTTCAGCCGCCAAGACCGTCGACGATGTCTGGAAGGAGATCGTTGCCGGCGCTCACCCCCACCATCCCGCCGCCGCCGTCTCCGGAGACAGAAATGCCGCCACCGTCAACGCCACCGCCCCAGAGGGCTACGAGGCTATTACCCTGGAGGATTTCCTCACCAAGGCCGGCGCCGTCAGAGAGGAGGACGTGAGAGGGGTTCTGCCCCCTTCTTCCTCTCTCCCCTTTCCTCTCCCTCTGCCCGCCGAAGGCTCATCTTCCTCCGTTGAACCCTTTGGAAACGGCGTTGCGCCCACCAATTCGGTTCCCAAAGGGAAGAGAAGGGTCGTGGAGGAACCGGTGGACAAGGCCACGCTTCAGAAGCAGAGGAGGATGATCAAGAATCGAGAGTCCGCTGCTAGGTCCCGGGAACGCAAGCAGGCTTATACATCGGAGCTTGAGTATCTTGTTCACCAGCTGGAGCAAGAGAACGCCCGGTTAGTTAACGAAGAGGTGAGGGTTTGA


Promoter Sequence:
>Vu_27902::LG7:42327521-42329521(+)
GTAAGAGGAGCAAGATCTCCTAGTTTATGGATTTTCCCTTGGCTTAAGATGATTAAAAAACTAACCTTGTGTGTGGTAGCTTGGGAGGACAAATTGTTTCACTTCAAATGAATAACTCGTTAGAGTATGATATCAATATATGTATCTAGATAGTCAAGTCTAGAATTTATTATTGTATGTCTTAGGATTTGTTGGTATATCTTCGCCTATGAATTAACATTTACATTTTGTGTTATATATGTATACTCTTTTAGTATAATTAGCTGACCTTCTATTTTTGTTTTATTTTTTTGAGTTTGTATTCTTATTTGTAATGATCAACTAATTGATGTGAGTAGATGAAAATGTCTTGTTTATTAGGGTCAGGATGATGATAATATAAGTGTTGAATAAGATGTGGTTTTCTTGTTTTAGCAGTTTTCAATATACTCTATTATAATTTTTATTTAAAGTGTAATTATTCTGAGTAGTTTAAGACCTAGATATATTATGGTGTTATGGTTATATTTAAATAATTATAATAATAATTTATTCATTTTTTTGAGTTAACAACTTTTTTATATTAAATTTATAATATTTTTATAATAGTTAAATATTATTAAAAATAGATGTTACACCATTAATACTTTCTATTTCACATAACAAACGTGTGTAAAGATATATTTCATGTAATAATAAATATTTTAGAATTAAAATATAAAATAATAAAATAATAAAATTGACATAAACAAATATTTTATTGTGACACCAGAAATTATAATTATTTACTAGTCTTTTATAATACATTATATATTATTAATGTATCATGTGTGCATTACAATATTTTTTGTTTTTTTTCTTTATAATTGAAAAAGTTTAGATGATATGTTTTGTATATAATTAAAAAAACTCATTTAAATATATATTTATCTTTTTTAACAAAATCAATATATATTTTAAGAACATATATATGCAAATAAATATATATTTTTATAATAAATGTAAATTTACTTCATATATATTAACTGTATTCTAAATAATAATAACAATAACTTTTTTTAATATTATATTTTATTGTACTTGACAATTTTCTTTCATAGGGAAGAAAACCTCCTAACAAAATATGGTTTCTTGATAAAAAAAAATGAAATAAACGTTTTAATTAAATCATGTTTGATTTTACATGTTATAATAACAATAGATATCATAATTAATATAATTTATTTTTTCCTTTAATTTATTGACAGTTTTATTTTTATGCTCTTTCAGTTGATATTTTGTTTTTTTTATGTTTGTTGGCATTATATTATAATAATATATAATTTTAGTTTTTAATGATATTAAATATTTAATATTATGACTTTATCAATTTATAAATAAATATATTTACTATATTTTTAGTACTATTTTTATTATTATATTTGAAGTTAAAAATAAGAAAAATTAATTAAAGAAAAAAATTGTACCTAAATTTATAATATATGTCAGTTTCTAGTGTGATCTAGATACAGAGAGAAAATGCGTATATTATTATTATTATTTAAATTATTTAGCAATGCAAATTTGTCTGCCCTGCCATTTTGACAAAATAAACTCTTAGAAGTTTTTGCAGTTCCGTTTGAATGGTACTTAGTATTTCATATAAAGAGATATTAGCATGAAGAAAAGACATGAATAAGGAATTAGACGAGAGAAGAGGAAGTAGTAAAAACAGAGAAGTAAATCACGAAAGACATGTGAGCGTTGAAGAGAAATAAGAATGAGATTCATTAATGGCATGTAAAGTGAAAGGAGAGAGTAAGTAGAAAAAAATAACATAAAGAAGAATAACAAGTACATAATCCATGCTTTGCTTTCTTTTTTGTGGGGTTTGTGCCCAAAACTAAAGAAGAAAAAAACATACAGTGAAAGGGTGAATAGATTAATAAGAAAAGAAATGGAAGTAGTCTGTAATCTTTGGTGACAGTTGAAGTGGAAGAAAGAGAAAGAAGAAGGAAAAAAAGAAGGCTTGAAAAGCGGCA


Gene Sequence:
>Vu_27902(+)
ATGGCGTCGTCGAAGGTTGTTGTCTCGACGAATCCGGATCTGCCACGCGACTCTTCTATATCTCCCCTTTCCTCTCTTCTCCTCTCCGATCTGCACCACTCAACCTCCATGGACGACCTTCTCAAGTCCATCACCCCTTCAGCCGCCAAGACCGTCGACGATGTCTGGAAGGAGATCGTTGCCGGCGCTCACCCCCACCATCCCGCCGCCGCCGTCTCCGGAGACAGAAATGCCGCCACCGTCAACGCCACCGCCCCAGAGGGCTACGAGGCTATTACCCTGGAGGATTTCCTCACCAAGGCCGGCGCCGTCAGAGAGGAGGACGTGAGAGGGGTTCTGCCCCCTTCTTCCTCTCTCCCCTTTCCTCTCCCTCTGCCCGCCGAAGGCTCATCTTCCTCCGTTGAACCCTTTGGAAACGGCGTTGCGCCCACCAATTCGGTTCCCAAAGGGAAGAGAAGGGTCGTGGAGGAACCGGTGGACAAGGCCACGCTTCAGAAGCAGAGGAGGATGATCAAGAATCGAGAGTCCGCTGCTAGGTCCCGGGAACGCAAGCAGGTACATACCCTTCTAACGTTGTTTGATGTTAGACAAAGGGCTAATCTTTGGCAGAGTAGGTTGGGATGAAATCCTTGTTCGGAAATGTGTTCACTTTTATTGAACAGGGATTCTTGTGGGAAGTCCAAAATCTTTTGTTCAATGTGGTTTCTAGTTTCGAGGTTGGACTTAGCTGATTGGGATTGGGAACCAAGTGGATTAAACTTAGGATTTTTGTCTTGTTTTGATTTCTGGGTTTTGTTCTGGAGCTTATTCTTTGGATGTTCCTTTACTGTGCAGGCTTATACATCGGAGCTTGAGTATCTTGTTCACCAGCTGGAGCAAGAGAACGCCCGGTTAGTTAACGAAGAGGTGAGGGTTTGA