Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28321 LG7 50404218 50404379 PREDICTED: NAC domain-containing protein 78-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, drought recovery, drought recovery, regulation of reactive oxygen species metabolic process, regulation of reactive oxygen species metabolic process, positive regulation of transcription, DNA-templated, leaf senescence, drought recovery, leaf senescence
Cellular Component   located in   nucleus, cytoplasm, nucleus, plasma membrane, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 50404286 missense_variant p.Leu32Met
T/C 50404307 missense_variant p.Lys25Glu
A/T 50404324 missense_variant p.Val19Glu
T/A 50404370 missense_variant p.Met4Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28321.1
MAPMGPGFRFHRTDEELVVFYLNLKHKITGNLSRYDHIAVVDVYKLEPWDLPR*


CDS Sequence:
>Vu_28321.1
ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCGCACCGACGAAGAGCTGGTGGTGTTCTACCTGAACCTGAAGCACAAGATCACCGGAAACCTGTCCCGATACGACCACATTGCAGTGGTTGATGTCTACAAGCTCGAGCCTTGGGACCTTCCCCGTTAG


Promoter Sequence:
>Vu_28321::LG7:50404379-50406379(-)
TAGTTTCAATACTATAAAAGGCAAAAATACCTGTGTCCGGATAAAATTTACGACAGATAATTGGTACCTGCACGTATTTGTTACTCATAGATAACAAGCAACAAATATTTTAATACCCTTTTATAAACAAGTTGAGTGCAAGTATCATACTATCCTTACCCATGGATATTCATTACTCCAAAAAATAAAATTAACATTTAATTTATATTTTATTAAGTTAAATTTAATTTAAATTAAAATTAATTTATATTTTATTAAATTTAATTTAATTAAAATTTAGTTTTAATTTAATTTATATTATATATTTTTTTAATTTTATTTAGATTTTATTATAAAAAATCATGAAACAATTTTTTTAATTATCCATAAATATTCACAAGTAATTTTTTAAACTGATATTTAACATGACCTATTACCATCATGGAAATAGTCCTCCAAAAATTCTGATCTACTGAAGAAGGATGCCTAGAGCACAAATCATGACGTCCAAATGCGTAATTCACTATATATCTCATTTAAAGAAGCACAAATCTTAGTGAAATAAATCACTACTTTTTTAAACTTTTTATGGGTGTACAATTTACATCCAAATTAATTGAATCAAATCTATTTTTATCTTGTTTAAAAGATAATAGTTATCTGCCAAATTTACTTTTATCATGTTTAAAAGCCAATACAGTTATCTACGAATTTTTATCCAGACTTAAAAATTTATTTTTGTAATTTACTGAGTCTAAAACAAAAAAGAATATATTTTTTTACATAATTAACGATTGTCACTTAAGTTTTAGATATTCTTTAGTGTGTCATGTCTGAACTCTGTTTTAGATATGATTTTTTAGTGTAATGTTGAAAAAACTTTACAAAGAACAAAACAATATCTTAGTAAAAGCCAATTACACAAGTTTTCACAAGACAAAAAAGACTTTGAAAAGTCAGTTATCTCATTAGTAAACGAAAGACTTAGAAAAGTTATATACACTAATACAATTTTTGCTTTTAAACTTACACAATATACCTTATTTTACACCAAACCGGTGCCTATCACAAGGCGGTGACAGTTTTGTAATAAATTGGACCTTATAGGCCTCGGTTGCATGCAGAACCGGTGCAGAACAGAGATACAACCTCGGTTGCAAGCGGAACAGGTGCCTAAAAGGTGTCAACTTTATGAAAAAGTGATACGAGCTCAGGCTTTTTGACTGACAACTTTATGAAAAGGTGATACTATCTCGGTTTCCCGCAGAACTGAGGCATAAAGCCTGAGCTGCCACCTCGGTGAACTTAGACCCGGTGCCAAAACATTCATCGGCTTCGATTCCTTTCTGACCGAAGCATATAGGCTTCAGATTTTTCATTTTAAGCATCGTTTCGTTCATAACCGGTGCTGTAGAGCTTCAAAATTCTCAGAGTTTGTTCATTTCTTCTCGCACTGCTTCTTCTTCTTCTTTCTCTTCACGCTGCTGCTGTTCATTGGCTGTGTTCACTGCTTCTTCGTTCTTCTTTGTGTTTATTGCTTCTTCTTTCACTTTAAGCTTCCTTGTGTTCATTGCTTCTTCAGTTCTTCTTCTTCGCGCTGCTGCTTCGTCATTGCTTCTTCTTCGTGAATCCACTGTTCCACTTCTCCCCCTCACGGCTGAACGTCCTCTCTTCTCACCTTCACTGCCTCCAGCGTCGTCGTCCAACGCCGCCACCGTCTCTGCCGTTTGTCAACATCACCGCCACCTACTATTCTCACTGCCACTATCTCCCTCTTCATCAATCATAAACGAAAGCCCTAATCCCCAATTTTCTTTCACTCTTTTTCTCTCTCAGCAATTCATCTCTTTTGAATCCAATCCATGGCACCTATGGGTCTCGGTTTCCGATTCCACTACACCGACGAAGAGCTGGTGGTGTTCTACCTGAACCTGAAGCACAAGATCACCGGAAAGCTCTAATCCCCAATTTTCTTTCACTCTTTTTCTCTCTCAGCGATTCATCTCTCTTGAATCCAATCC


Gene Sequence:
>Vu_28321(-)
ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCGCACCGACGAAGAGCTGGTGGTGTTCTACCTGAACCTGAAGCACAAGATCACCGGAAACCTGTCCCGATACGACCACATTGCAGTGGTTGATGTCTACAAGCTCGAGCCTTGGGACCTTCCCCGTTAG