Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29202	LG8	19298419	19304246	PREDICTED: serine/threonine receptor-like kinase NFP	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to oxidative stress
Cellular Component	located in	chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid membrane, chloroplast thylakoid membrane, plastid, chloroplast thylakoid membrane, chloroplast thylakoid membrane, chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid membrane, chloroplast thylakoid membrane, chloroplast thylakoid membrane, chloroplast thylakoid membrane
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
T/A	19298463	synonymous_variant	p.Ser15Ser
G/A	19298635	upstream_gene_variant
A/C	19298846	upstream_gene_variant
A/T	19298848	upstream_gene_variant
T/C	19298883	upstream_gene_variant
T/C	19298918	upstream_gene_variant
T/A	19299130	upstream_gene_variant
C/T	19299186	missense_variant	p.His119Tyr
G/A	19299250	upstream_gene_variant
T/A	19299255	upstream_gene_variant
T/A	19299256	upstream_gene_variant
T/C	19299261	upstream_gene_variant
A/G	19299345	synonymous_variant	p.Val138Val
T/A	19299350	missense_variant	p.Val140Glu
T/G	19299773	upstream_gene_variant
G/T	19299774	upstream_gene_variant
G/C	19299834	upstream_gene_variant
C/G	19299913	upstream_gene_variant
A/G	19299990	upstream_gene_variant
C/T	19299996	upstream_gene_variant
A/G	19300001	upstream_gene_variant
C/T	19300007	upstream_gene_variant
T/C	19300113	upstream_gene_variant
G/A	19300236	stop_gained	p.Trp191*
A/G	19300243	synonymous_variant	p.Val193Val
T/C	19300251	missense_variant	p.Ile196Thr
G/T	19300567	stop_lost	p.Ter235Leuext*?
T/C	19300575	missense_variant	p.Phe238Leu
C/T	19300658	upstream_gene_variant
A/G	19300679	upstream_gene_variant
G/A	19300688	upstream_gene_variant
T/G	19300701	upstream_gene_variant
A/C	19300741	upstream_gene_variant
T/C	19300742	upstream_gene_variant
G/T	19300744	upstream_gene_variant
T/A	19300830	upstream_gene_variant
G/C	19300888	upstream_gene_variant
A/C,*	19300949	upstream_gene_variant
A/T	19300950	upstream_gene_variant
A/T	19300955	upstream_gene_variant
C/T	19300956	upstream_gene_variant
G/A	19301032	upstream_gene_variant
G/A	19301232	upstream_gene_variant
C/T	19301314	upstream_gene_variant
A/T	19301620	missense_variant&splice_region_variant	p.Arg254Ser
G/T	19301864	stop_gained	p.Glu336*
A/T	19301865	missense_variant	p.Glu336Val
A/T	19301938	synonymous_variant	p.Gly360Gly
G/A	19301983	synonymous_variant	p.Ala375Ala
G/T	19302076	missense_variant	p.Glu406Asp
A/T	19302176	splice_region_variant&intron_variant
T/A	19302629	upstream_gene_variant
T/A	19302804	upstream_gene_variant
G/T	19302808	upstream_gene_variant
G/A	19302886	upstream_gene_variant
G/A	19303266	downstream_gene_variant
C/T	19303274	downstream_gene_variant
A/G	19303422	downstream_gene_variant
T/A	19303423	downstream_gene_variant
C/G	19303691	synonymous_variant	p.Leu498Leu
G/A	19304006	synonymous_variant	p.Val603Val
G/T	19304187	missense_variant	p.Asp664Tyr
G/C	19304237	synonymous_variant	p.Val680Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29202.1

MAVCSSLSLLPPIPSQPKTFSFSQTPLTKIFTNGNTPTRFLLNAGFNEIEPDLNEDPKDVYATNGIDADDFEYGIYDDHHTYFEGEQKGTFWGSIMEEIAAAEPPTGFQGLMSWLFPPAIALGVYFNVPGEYLYIAAGVFVIVFCIIEMDKPDKPHHFEPHIYNMERGARDKLINDYNTMNIWEFNEKYGHFGMYMRSHSGPWCHLINNGSLDLRSTSKTFGIRDSTSSSLPGFTRLKFLPTESSYSQTKDKYELKEQDIIDVNNDTLHDYDTIFIPVEQLPSLSQPAVAPAAPPGGNGSDTGSGSGNDRTGTVRGLGIGLGVVGMLLVLVSGLWLWREFVMKKRLGYEDEEEEGGRKKVYSGGKEGQKGDLDVKLMANVSDCLDKYRVFDVEELVEATNGFDGRSLIEGSVYKGEIDGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEERKEKLNWKTRLRIAVDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWESAIRTFEVDSEQEKARRVREWMDKDILRETCSMESLMGVLTVAIACLQKDQSKRPSIMDIVYALCKSEDLGFDISDDGFGSPRVVAR*

CDS Sequence:
>Vu_29202.1

Promoter Sequence:
>Vu_29202::LG8:19296419-19298419(+)

AATCAGTCCCAAAATCAGGTAAAAGAGGAAGGCTATGTTAGATCCTTGATAATTTGTCAAAGCCCGGAATATGGATCATTCACTATAGATTACATGGCCAAAGGTTGTTATCTGGAAGTAACATTATTGTATCAGTATTGATTATTGACCTCTAGCGAAATTTGTCAAAAAGTATTTGTGTATATGTATAATTCAGGCAGTAAGTTTGTCTCAGTCCCAAGAGTGTGTATGTGTATATATGTATAAGTTAGACCGTAAAGATTCAATACAAAGACAGTCATATAATACATGTATTGATATCCGGACACGGATACATAACTGATTTTGAAGTAACCAAGCTTCAAAGGCACAAAAGACATGAATAACATATTACTTACTTACCATCCATCATTGTATACTGAGCCATGCAGTGATTGAGGAATGTGGAACTCCTTCTCCATTCGAGAAGAGCTCCAAATCTGAAAACAACAAGCAGCTTCATTCTCTGGATTTCGAATCACTAAGAGCTTTGAGCCAGATGGTGATGGAACAATCACGGACACGCCAGACATCTCTATTGGAAACGGAGCCCACAGAAAATTCACAGAACTGTTCCTTTCTTTTAGAATGTTACAGGACATGATGGATGTCCTCCTCGTGTTTGTTAAAAGATCTGATTGGGAAACTGCAAACATTCCTTGCAAGTGCAACCCTGGAGCTACAGACAAAAGGGCAAAGTCTCAATTTGGCTAGCAATGCGATGGAACTAGTACAGATCAATGAAATAAATGAACTATGTTTCGATAAACTTCTCAACAATAATTAATGAGAAGAAAACAATAAGAATATAAAATGAAATAAATTCTTCTCCTGAGAGCTAAAATTAGCTGATGCATGAATTGCTTCACAAAAAGCTCTCTCATTTAGTTTCTTCATCTGATTTTAACTTCTGTGGGTTATTTCTATTTTTCTCCCTTTAGTATAATTGAAAAGTTCATTGCTTTTCAAAGAAAGCAACAAAGGAGACTTACAGCTAAAAAGCCATGCCTTGTCAATGTTGGGAATACTGGTGAACTCTTGAAGTAAGCTAGAAAGGTGGGCATAGTCATCCTCAGCTTCCTTATGCATTTCCAAGCCTGAAACAAAACCACCAAAGATCATTGCAATTAGCTTGCTAGTTGCTTCATAAAGGAAAAATACACTTTTGTTTCTTCAACAATGCAGATTAGCTTACAGGGGATCAACACCTTGGTACATAAAAGATGAGAAATAATATAGTGAAGAACATGAATGAACAGTGGCATTAGTTAGTGAAGTATAAAAGGGTGGCAATTGGTAAGCAATACAGGGGAGAGAAAACGTTTTTTTATTTATACAGAGAATGAAAAAATAAATACATTGGAAGACGAGCTGATGCTAAAAGGAAGTTGTACTGAATGCATCAGGATTTAGTATGGAAGTGGGTAGTGAGGAGAGAGTATGAATGGTACCTTTGATTGGTGTAAACTGTGTGAGTGAGTGGAGTATTAAATGCAATCAAAGGAAGAAACAGAACTCTGTTTAAGTTTGATGGAAAGAGAGAAACATAGGTTTTTGTAGTGTGTCTTGTTTGACTCCGAAAACAGAGAGAGCAGAACGGTGAAATTAAGAATAGTGAATTTTTTTGTTTTTTCTGAAGGTGGATATTATTTTATCCGAAAAGACATATCTATTATACTTTTATATTTGTAATGTACAAAATACTTTTTTCTTTAAAAAGCCTTGTCTTTGTCTTGTATAGGTACTTTTAATAATTTATTTTTCTTTAACTATTCAAAAGTTTTAATTCATTTATGAAGTTTTATTACTAACAAGAATCCAACGTCCAATAGACATATATATACACATATGGCTTAAACTCGTATAGAATAACAAGTTGATAAGATAATTGAATATAAAACTAAAGTGTGTTGTTTGTGTGGAGCATGTTATATAGGATGAGATAGATAGATAGACGGACAGAGAAGAAAGAAAAGCAGAGA

Gene Sequence:

>Vu_29202(+)

ATGGCAGTGTGTTCCTCACTCTCACTTCTCCCTCCCATTCCTTCTCAACCCAAAACATTCTCGTTTTCTCAAACACCACTCACAAAGATCTTCACCAACGGTAACACCCCAACAAGATTCTTGTTGAATGCTGGTTTCAACGAGATAGAGCCTGACCTCAATGAAGATCCTAAAGACGTATATGCTACCAATGGAATTGATGCTGTATATCTTCTCGACCATTCTTCTGTTTTCTTCTCTTTTCTTCTGCCCTTTTGCTTCCACCGTCACTTTCACTTCTTTCATGCCAATTTCAGGATGATTTTGAGTATGGAATTTATGATGACCATCACACTTACTTTGAAGGAGAACAGAAAGGTCTGTGTTTTTCATTCTTGCTCCAACTTTCTTTTCATCGCTGTCACAGGACCATGAACAAAAAGATTAAAAAGAATGATTTTATTTGTAGAAATTTGTAAGAGAATTATGGGGTCCATTCTTAGCCTTTTTTCTTGACATCTGAGCATATTCATAAAACACATACAAGTTGAAAATATGATATAGAATAAAACACATACTTTTCAGTTGACAAAGTTGATGATGAATATTCATTTCAGGAACATTTTGGGGTTCAATTATGGAAGAGATAGCAGCAGCAGAACCCCCCACAGGATTCCAGGGTGTGTTTTTGATTATCATTCGCAACATTTTCAATATATATAATGGTCTTTTTTATCTTACTATCATTCATTTTATGCAGGGCTTATGTCATGGCTCTTCCCACCAGCCATTGCTCTTGGGGTGTACTTCAATGTTCCGGTAACAGAATCATCAAATGTTTGAATATAAACAGTGCATTTGCATTGTTAGTTTGCTAACTTTGTATAACTTTCTGACTAACAAGTTTCAATTTTTCAGGGGGAGTATTTGTACATTGCAGCAGGCGTATTTGTAATCGTATTTTGCATTATTGAGATGGATAAACCTGATAAACCCCACCACTTTGAACCTCACATATACAATATGGAAAGAGGAGCTCGAGACAAGTTGATAAATGACTATAATACCATGAACATATGGGAGTTCAATGAAAAATATGGTGACCTGTGGGATACTACTATCCAGAAGGATGACATAACCAAGAGATAATTGTATATATTTCATCACTTATAATGACAATTGATATTTTCTTTTCACTTTTTACTTTTCCCATTTTTCTGTTTCAAGAGGTGTATGTATGTCCCTTTTTTTTACCTTCTTATTTATAAATAGAAACTTAAGTTCTTTCTGATTTTGATTTTCATTCTTTATTCTGAATTGTATGAACTCAAAATTATTGAATATAGAAAACAGTGTTTTTTTTTTCCTTATTTCTTGTGTTTCTAAAGAGGATACTTAAGAATATTGCTGTTCATTTGGACTCAAAAACCTTCATTGATTCTTTGGCCAGCTTTTATAATTCCAGCAAATCCCATCAAACAAATATGATCTCAGCCACTACCCTCTCTAAGGTCACAAACCAACAGCACACAATCCAACGCCTTTTTCAGGACTTAGGAGCAATCATAAAAGTGTCCTTTTCCATATTATCTAAATAACTTAAATTATTCAGATAAAACTCTAAGTTTGAATAGAAAACAATACCATGTTCAGTGGAAGAATAAAAGTTCAGTGGATGGTCATCGGTATAAACATATTCTATTGTAAAGATTGTTTTACTGTGTTAAGTATTGATTTTTCTAATCACCACTTTCATGCATTATATTTTTTACTGCTGAAATACACTGCATTCCATTTCCAATCCTTATCTCTTATTATCAACTTGTGAAGGTCACTTTGGAATGTACATGAGATCACATAGCGGTCCTTGGTTAAATACATCTAACCAAATTGATTTTTCTGCCAAAAACTGTTCGAAAGTTGTGCTATGAGCAAGTCAAGCCATTAAAATTCCAGGTGCCATCTCATCAATAATGGAAGTCTAGATCTAAGGTCAACTTCTAAGACTTTTGGGATCAGGTTTAGTCTAATAAATGACACCAAATTTGACATTATGCCACATGCACTAATTCATTAATTATTAAGCACCTTGAACAACAAGAACTACTGTCCATTTTCTGCATAGTGCAGAGACTCCACTTCTAGTTCTCTACCCGGTTTTACACGTCTGAAATTTCTTCCCACTGAGTCTTCATATTCCCAAACCAAAGATAAGTATGAATTGAAGGTAATAAAATTGAAAACCATTATTATAATATAACGTAATTGACTCAAAGCAAGAAACAAGATTGTGAGCGAGGAGTTGGGATTAAAATACAAGTTTCTGAAGCTTAATCATCAGTTATCGCAGTTTCAGTCTACAGTATAAATGATATATTCAATTATTAAAAACCAAAACTTTATTATTAGAATCGTGTGGCAGAAGGCAGCTGTAGAAAATGGAACACCCTTTATCAAAAGGAATCTGAACATTCATTGTTCAACCATCTTGACCAGAATTCAGACAAACTTTTCCACACAACACAACATAACTATTAAGAAGAAGAAAAGGAAGAAGACGATGATTCGAATATAAACTCAGAACCCCAAAACAAAACCAACCACCTACACAAACACAATGACACCCCTCAAACTGCATCACTTCCTCCTTCTCATGTTCATCTTCTTCTTCTTCCACTTGCTCCCTTCTTCCCACGCCCAAACGCCACGTCAGGAGAACAACACGGGCTTCACGTGCACGGGCACCCGCACCTGCGCCGCCTACGCCTTCTACCGTGCCTCCGCCCCCAACTTCCTGGACCTGGCGGCCGTGGGCGACCTCTTCGAGGTGAGCCGCCTAATGATAGCCACGCCGAGCAACATCTCCTCCGTGTCCTCTGCCCTGGTCGAAGACCAGCCCCTCTTCGTCCCTCTGACCTGCTCCTGCAACCCCGTGAATGCCACCTTCGGGTCCCTCTCCTACGCCAACATCTCCTACGCCATCCAACCCAACGACACCTTCTTCGTCGTCTCCACCTACAAGTTCAACAACCTCACCACCTACCCTTCCGTCGAAACCGTCAACCCCACCTTGGTCGCCACCAACCTCTCCATCGGCCAGGTCACCATCTTTCCTGTCTTCTGCAAATGCCCCGAAACCAACAACACTAACTATATGATCTCCTACGTTGTGCAACCCGAGGACAACATCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAGGATATAATTGACGTCAACAACGACACACTCCATGATTACGACACCATTTTCATCCCTGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCGGCTGCGCCCCCTGGTGGGAATGGGAGTGACACTGGGAGTGGGAGTGGCAATGATAGAACTGGAACTGTTAGAGGGTTGGGGATTGGGTTGGGGGTGGTGGGGATGTTATTGGTGTTGGTAAGTGGGTTGTGGTTGTGGAGAGAGTTTGTGATGAAGAAAAGGTTGGGATATGAGGATGAGGAGGAGGAGGGAGGGAGGAAGAAGGTGTATTCGGGAGGCAAAGAGGGACAGAAAGGGGATTTGGATGTGAAACTGATGGCGAATGTGTCGGATTGTTTGGACAAGTATAGGGTTTTTGATGTTGAGGAACTGGTGGAGGCCACTAATGGGTTTGATGGAAGGTCCTTGATTGAGGGATCCGTTTACAAAGGGGAGATTGATGGGGAGCTCTTTGCCATCAAGAAGATGAAATGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAACCACTCACAGCACCAATCTCTTTTCCTTAGTCCTTTTTTCACATTATTGCATATCACTCTTTGTTTGTTCTTCATTTTCATCTGCCATCACTGTAAAGAGTTTTAGCATCATTTGTGGTTGGAATTTGGATTAAGGTGTGGAACTGAATTCTATATCTGTTTGAATCTAATTTTCTGACAAAGTTTGCATTGCTAATCACCTGAAAATTATGGCAAGCTCGACTTTTGAGGAAGTTATTGTACTCTTTGATTTAGAAAAGTGTTATAAAATTTAATAAACTTAAGATTATGGTATTGTTATTGGATGAGAGTAGAAAAACCCTCAACACGTTATGGGTATGAATTAGTTTTTTTTTTAAGAACTTTATTTCCATGCAACATAATCAATCAAAACTTTTTAGTGATGTGTCTCTTAAGACAATTAATGAAAAGATCAGTAACTTGTGCTTAGTTCCTGGTGTTATTCTTGAGACGGCAGAAGCAAATATGCAAGAACAGATTGAAATTTGAAAAAGTCGATGATAAGGTTTGAGTCAAAAGAGCTTTTACTTTGAATAAAATAGGCTGGGAGTTAATAAATATCTTATTGTCGATGATTTAATCAGATGATATTAAGTGAAGTGACTTGTCTGATGAGTAGTCAACCTGCCACTAATTTTTATAATTTAGCATAATCAAACCAAGGGAATAAACCTCTAGATACCTTGGAGATGCAGAATTATTTTAATACTCGGGACAAAAAATGATCGGAATCTGGCTTGAGAATTAATTATTCTGTTGTTGCTGTGCGAACAAACCTTCAGTTGTAAAGCAACTTGTCTGAATGATTTGTAAAACTTTGTCAGACTTTTTATTTTGGTGATTGTCAATGTTCATTATTTTCAGGTTTGTATGTCAGAAACGCGTCAATCTAGAGGAATAAAACAATAGTGGTTGACGGCATAGTTGCTTCTAGGTATTTAATAAAAGATGATTCCAACTTTGTCATATTTTTCAGATCAGGGTTAATTAATATCATAGAGTATGGTGTTAATGATTTAACTAAAAAGCAACACGTCAAGGGCAGTTAAAAGCACAACGAAAGACAAAGTCGCCGCTTACCTTTTTGTCTCTTTCCAAATCATGACAAATTGGTTAATATGAATTCCCATTTGAGCCTTTAGGTAGTGGTTGAATTTAGGTGGTTACATTTCTAATGAACAAGTATATCAAAGTAATAATATAATAGGCTACTCAGTATCCATGTAAATGTTTTAGCACTCGGATGATTATATATGTGCACCATTATTCATGCTTGAATGGTTGATTAGCAAAGTGTCATTTTCTGTGTTGAAGGTAAACCATGGGAATCTTGTGAAGTTGGAGGGATTCTGCATAGACCCAGAAGAAGCAAACTGCTATCTAGTCTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCATGAGGAGAGAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGCCGTTGACATTGCCAACGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTGTTGGACTACAACAAGAGAGCCAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCCACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCCATTGATAAGGAGGGAAATCTGTTGTGGGAAAGTGCCATCAGAACCTTTGAAGTGGACAGTGAGCAAGAGAAGGCTAGGAGAGTGAGGGAATGGATGGATAAGGACATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTTCTCACTGTTGCAATTGCTTGCTTGCAGAAAGACCAGTCAAAGAGGCCAAGCATAATGGACATTGTCTATGCACTGTGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGATGGGTTTGGCTCACCACGGGTGGTGGCTAGGTAG