Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29316 LG8 22879625 22884262 PREDICTED: transcription factor MYB12-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   flavonol biosynthetic process, flavonoid biosynthetic process, positive regulation of transcription, DNA-templated, response to light stimulus, positive regulation of transcription, DNA-templated, response to UV-B, positive regulation of flavonol biosynthetic process, response to salt stress, response to auxin, flavonoid biosynthetic process, positive regulation of flavonol biosynthetic process, response to ethylene, flavonoid biosynthetic process, response to salt stress, flavonol biosynthetic process, response to ethylene, flavonoid biosynthetic process, response to UV-B, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to auxin
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 22879678 synonymous_variant p.Thr18Thr
G/A 22879884 missense_variant p.Glu61Lys
G/A 22879886 synonymous_variant p.Glu61Glu
A/T 22879961 stop_lost p.Ter86Tyrext*?
C/A 22879977 intron_variant
C/T 22880040 intron_variant
T/C 22880043 intron_variant
T/C 22880238 intron_variant
A/C 22880353 intron_variant
G/A 22880665 intron_variant
T/A 22880739 intron_variant
T/C 22880743 intron_variant
C/T 22880807 intron_variant
G/A 22880882 intron_variant
G/T 22880907 intron_variant
C/A 22880953 intron_variant
C/T 22880962 intron_variant
G/A 22881071 intron_variant
A/T 22881159 intron_variant
T/C 22881192 intron_variant
T/A 22881197 intron_variant
G/C 22881199 intron_variant
T/C 22881213 intron_variant
T/C 22881214 intron_variant
C/T 22881437 intron_variant
A/C 22881598 intron_variant
A/T,* 22881645 intron_variant
A/T 22881646 intron_variant
C/A 22881772 intron_variant
T/C 22881905 intron_variant
T/C 22881983 intron_variant
T/C 22882093 intron_variant
T/G 22882135 intron_variant
C/T 22882206 intron_variant
A/T 22882262 intron_variant
A/T 22882273 intron_variant
T/C 22882398 intron_variant
A/C 22882399 intron_variant
T/C 22882521 intron_variant
C/T 22882583 intron_variant
G/C 22882625 intron_variant
T/A 22882755 intron_variant
T/C 22882777 intron_variant
T/G 22882865 intron_variant
G/T 22883093 intron_variant
C/T 22883120 intron_variant
G/T 22883219 intron_variant
G/C 22883833 missense_variant p.Arg194Thr
G/T 22883900 missense_variant p.Arg216Ser
G/C 22883971 missense_variant p.Arg240Thr
G/A 22884068 synonymous_variant p.Pro272Pro
G/T 22884143 synonymous_variant p.Ser297Ser
T/C 22884160 missense_variant p.Ile303Thr
A/G 22884171 missense_variant p.Asn307Asp
C/T 22884176 synonymous_variant p.Cys308Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29316.1
MGRAPCCEKVGLKKGRWTSEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAQEENTIVKLHASLGNRWSMIASHLPGRTDNEIKNYWNSHLSRKIYSFPKMENQQGDTPKVVCVPPKRKGGRTSRWAMKKNKNYIVNADRSKQSLSEENITVSIVPKAGSSWTEGRRETKVDEKSEKEKSSDEEILKVCEIEGIEEGMSEMLESCLAETCGVWDINEERESNDMEMVASGDACLNKTSSCDSSVNGYSSSSSVAQGLDQHWDWESVIEFNNIVESQLASDHFNHKDELLTWLWEDDNWVGETDLKIQDNVVDWLLS*


CDS Sequence:
>Vu_29316.1
ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGGTTGAAGAAAGGGAGGTGGACATCAGAGGAAGATGAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGATTATTGAGGTGTGGCAAGAGTTGCAGACTCAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTCAAGAGGAGAACACCATCGTCAAGTTGCACGCTTCTTTGGGTAACAGATGGTCTATGATAGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAATTCTCACCTGAGCAGGAAAATTTACAGTTTCCCAAAGATGGAGAACCAACAAGGTGATACACCTAAAGTGGTGTGTGTTCCTCCGAAGAGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAAACTACATCGTAAATGCGGACAGAAGCAAACAGAGTTTGAGTGAAGAAAATATTACTGTTAGCATAGTTCCAAAGGCAGGCAGTTCGTGGACAGAGGGTAGAAGGGAAACAAAGGTAGATGAAAAGAGTGAAAAGGAGAAAAGTAGCGATGAGGAGATCTTAAAAGTGTGTGAAATTGAGGGCATTGAAGAGGGGATGAGTGAGATGTTGGAAAGTTGCTTGGCAGAAACATGTGGGGTTTGGGACATAAATGAGGAGAGAGAGAGTAATGATATGGAAATGGTGGCTAGTGGTGATGCGTGTCTCAACAAAACATCGTCGTGTGATAGTAGCGTCAACGGTTATTCGTCTTCTTCTTCCGTGGCCCAGGGCTTGGATCAACACTGGGATTGGGAGAGCGTGATAGAGTTCAATAACATTGTTGAGTCCCAACTCGCTTCTGACCATTTTAATCACAAAGATGAACTGCTCACGTGGCTGTGGGAGGACGACAATTGGGTGGGAGAGACAGATTTAAAGATACAAGACAACGTCGTCGATTGGCTTCTCTCTTGA


Promoter Sequence:
>Vu_29316::LG8:22877625-22879625(+)
CGTTTCGGGTGCTAACAGGGGGTTGAAGAGTTAATTGTCTTCAACCCCTTAAAAGTCCGTTGTGGAGGGGGACAACACCCTTTTTCCTCTCTTCCTTACCGGGAGGGCAATCTTATGGCCTTCACCTCCCGCCCGGCCCGGAAATAGAACCCAGCCCCCCCTTCTGATCCATTCATTTCTGCAAGCAAGGGGGATCTTCGATGCTGTCATTTCGAAATGTCTGCTTCAACTGCAGTTTCACCTCCCAAAAAGCAAAGTTGGCTTGACGAGCGCAGATGCGAGGAAGCGGGAGCAAGATAAGCGCTTTTGTTACTGAGAAGCTAGATTTACCGGGAGCAAGATAAGCGGGAGCAAGATAAGCGCGACGGTTCAAGACTTAGCTGAGCGTTAGCGAAGCTAGATTTATCGAGAGACTTCGAGTTAACGAAGCGCTGTAGTAGCGCCGGTCAAAGCCCTATGTGCTAAAATGTTGAGCCAAGGACGCTCCGCCTTATCTATAGAAGCAGTCAACCGAGTGCACAAACAGACGTCTTGCAGTGCACAAACGAACGTCCAACCCCAGCCCTACCACAAAACAATTCAGGAGGTGGTCGTCGCAGACGTCTGACGGGCACAAGGGACGTCTACGTGGACGTCCAAGGTGTACACCGGACGTCTAGATAGGCGTCGGGCCTGACACATCGGACGTCTATATACACATCCAATGTGGACCCCCGACGTTTGAGTAACTTCACCCACAAAGGCGTCGGGGGAAAGGTCGGACGTCAAAAGGCCAAAAGAACGTACGTCTAAAACCCTTTCTGCACCAGTGATATACATCAAAAATCTTTTTCACTAGTTACGTCTCATTCTATAATATGAGACATTCTATTAACTTCAAAATTTTAAGATATCATACATTAAAAACTTTTGATCACAGTTATATTACAAATTGTACGAAGATAAAACACAGTTATATTACAAATTATATCCTTCATCACACTAGAAAAAATATTGGCCCGAACTTGCTTGACAAAATCATATCAGTCCTATCGATCATGTTTCATGTATAGACATATAATATTTAAGAGACATGTTCACATGCGTATTGACTAGTTTAATATATAGTTTATTAAAATTTTAAACTAACAGAATAAAAAGCTCTTAAAATAAATATTAAAGTGTAACTCAATGTTACAAAATATAAGGTGTAATTTACATTGACTAAAGATTTTATTTTATTTCAAGAATAATTACAACGAAAATAGATACAGAGGAATGTATTTACTCTCTCGGAAGTTGGCATATTTCTTCGTATATATTAAATTAGGTTAATACAGTTAAAATAAAACACATCATTTAATACTTGTCTTCTCTGTCAGATAATTCTTTGTAGGCATGTTTACGGCTTTGCTTAAGTCCTAAGATTATTTTAATAAGCAAATTTAAGATTAATTTAATTTTGTAAAATAAAGTTTGTATCATATTTATATATTAAAATTGAATGATGCTGTTAATTGATGGGGACGGCCAACAATAATAAGGATTTGAAATTGATTAGTAATTTAATGACGTGTTATGTGAAAAAAAACAAAACATAACCTCTTAGGGAATGGGAAGAAGTTATAAATGTTGAAATTCTAAATAGAAGAGCATTGGTGTTGGAGGAATGAGGATGTTCCAAGTGTAATCGAGATGTTCCTAGTAACAGTATAGCATCAACGTGGGGGATGGAAGCCCCGTCACGAGGTTGTCGACGGTGGTTGAGCCACGACTGTAGCATTCATACACAGCGAACGTGGCACAATCTGCCACCACAGATATGTCTCCATCACTAGCCCCACCTCTGTGCACCGCTTTTCCAGTTCTATAAATTCATTAACACTCCCATCACCCTTTTTACATTTCAGCTGGCAAAAAAATACAAGCACGAGTGGCTCGCTTGCAACTTGTAAAAGACAAAACACACACTACACATGATACACTTCTCCTAGTGTTCTGTTTTTCTTAAACCTGAGACA


Gene Sequence:
>Vu_29316(+)
ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGGTTGAAGAAAGGGAGGTGGACATCAGAGGAAGATGAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGTATACTAACACTTTCACTTCCAACCAACTATACAAATTTCTCTTTCTTTCTCACTTGCATTACCAATTTTTTTAAGGATTATTGAGGTGTGGCAAGAGTTGCAGACTCAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTCAAGAGGAGAACACCATCGTCAAGTTGCACGCTTCTTTGGGTAACAGGTCAGCGCCACTCTATTATACGTAACAAAATTAATTAAGCCCAAACTTTTTTTTAATTTTAAAATAATTAATGTTCTTTTTTTACCCTTAACACACACGACATTCCAATTCACTTTATTACCCTAAATATATCCAACTACTTTCTAACACGCAAAATATAAAATAAGTAAACTGACTGACCCCCTTATTTGTCATCACCCAGATTCATAGAGATCTCTTTCAACCATCGTTTTAAAATAATAAATAAATGTAATATATAACACTGATAAATAATTTTACAATGTTAGTCAAACATAAATTATTATGTCGTCATCTTCTATTATAACTTTTTCTTAAATCATAGTTATTGCAATATTTATAAAGATAATATAACGATATTCTATAAAAAAAATTAAGCTGTTAAAAAAATTGCTTCTAGGATTATCTTTTAACATTAAACACTTAAAATTTTGGCTAATTTTTGTGCCCTAATTTTCGTATAACAAAATGTATCTTTGTATGTACTTTATTCCGACCAACTGTTGTAATAGAAAAAATTATATATAAAGTGAAAGAAAGTATACCCTTTAATCGTATATGTATATGATGTTGAAAGAAAGTGAAATTAATTGCATCTCGTCGTACACTCATTTATATGTTAGGTGTGCAGAAAACAAGCGTGGGTTGAATCACCTTATTGGTTGAGGCGAAATTAAAGAGAGAAAAAGTTGCCGATGTATTTTGCTAGCTGTATATAAACCTTTTTCTTAATAATTTTTTCGTTAAATAATAATATTATTATTATTAAAAAAGTAATAATAATCATTTAATGAAAATTATTTAACTCAATTAGGAAAAAAAATCATAAATAGATAATAAGTTCAACGGATAATTAAAATAAAATTATAAGTGCCATTTAAAAACAAATAAAATTTAAAGATTAACAGAAATAAAATTAAAATTGGTTGCTTATTTATAGATAGAATAAAGTTGATATCAATTAAAACAACATTGGTTGCGTTAAATGTTACTTTTAAAAAATGTTACTTTTAAAAAATGTTACTTTTAAAAAATGTTATAAATATCTTGAGCCATTTATTCGGCTTTTGACTCTTAAACGTTCCTGAGAATGGAGTATATATTATTTTTGTTCTTTTATCTTCTTTTGTATGATTGACAAGTACTTTTAACTTTTAATTAAGTAAATTTTTGTTTAATTTTATTGAAATATTTGAAAAATAAGTTTATTTTAGTAGTCTAGAAAATGATTTTCTTCTTTTGTTTTTTATTTTACATAAGGTAGGTTTCATTATTATTTTTATTTACTTTTTCTTCTTGTTATTGTATTTTTTCCATTTTTTACCATTATTTTTAGATATTTTAATATCACATTCTTTAATAAAAGTCGTTTCATTAAGAAAATTTTTGAGATTTGGATATTCTTAGCCTCCTTTAGAGTGTGTAGGAAAGATGTTATTTAACAAAAACACCATCCATTTAATATCACGACCATCACTGAGTTGCTTATGCTTTTCCTTCAACGACCTCAAGTCTGATAAAAAATATTAGCTTTTCGTTCTTCACAATAATAATTAATCTTTAAATACTTAATTTTTCTGTCTTTCCAAAAAAATAGAGGTATTATTTAAAAATTAATATTATTAATTAGTTTTTTTCAAAATTATTGAATAGTATTTTTTTAAAAAATAATTTATTAAATCTTTATTATATGTCTATTAAATTGTTTTATCACATTAATATAATCATTCACAAATTTCACTCTCACATTTATTCACTTTCTCTTTCGAATATGTTAAAAAAACAAAAACTTTATGTTTATATTCATAACTCACTCAGATCATCCATATTCAAAAAAATAAATAAATAAATAATCACATACCATTAATGTCTCACATCTACCATGGAGTACACCCAAAGTAAACAAAAATAAGTTGACTACATAATCAAACTTGCTCTAAAGTAATTCATGAAGATAAAACGACAAATATTTAATTGTATAATATAGGATAATTTTCACATCAACAATAAAATAGACAAATAATCCTCACAATTAATTTTTTAAATATTCCTTTTAATAATAAAATATTAAACTCAGATAATAATAGTATTATAATAATAATAATTTTTGTTATTATTATTGTATTAATCCATTTTCGATTTTTATTTAATCTTATGATTCGAAAGACTGTAGTTAAAACAGATTATATTTTATTACACCTGTTTTTTACTTTTGTCTAGTCTCATGTACCTATTTTTCAACTAGTATATTATGAAATATAATTTCAACTAGTTAAATAATGAAATTTCAATATTTACTTCGAATAATGAAGTCATTAATTATATAAATACGTAATTATTTACACGAGATATTTTATGAATAAAATTTTATCGTACAAATTATTTAAATCAATCGAAATATTAATATGTTAGGTTTACATGTATATAAAAAGACATACAACATAACAACACGTTTTAATTTAAGGTCCCATTAATTATGACACTTATAAATAAAATTTTGAAATAAAATAGTTAGATAAAATAATAAAATTGTGAGCTTAGAAAAATATGAGATAAATTTGTTTCTGACTGCGCATAAAGTCTCTGAACATTTGCATTACCGCTGAAATGTTTGAATGCGACAGCTATGTCCTATTTTGACAGTCCTTTTACCTTGTATAGAAACTACCTGTCCATGCACCTTCAGAACATTTTGGATAATTTTATACAATTATAGAAGATTAAGTATTTGTAGTTTTTAAATTTGAATCCGAAATTGAATTTTGTTTTATTTTTATTTTTAATATATATTGATTTTTAAATTTTAAAAATAAATAAATATAATTTTTTAATTAAAGTATTAACTTTTATATGTTAAACTATGTTTAAGTGATATTTAAATTTACAAAAAGTGTAAACAATCTGAATTTCAGCTAACATGTAAAAAGGTTTAATATATTAAAGTTTAAAGGATTATACCTATTTATTTTTAAAATTTTATTAAAATATTTGGGACAACAATAAATTTTAATTTCACGTCATAAATAAGAAAGATATATGAAAAGAAAAAATAATATTGACAGAGATAAATCATGTGATGTCGTAATGTTTACTAGAGTTTAGGATGAATAGTTTTCTAATTATATACTTAAAATAAACACTGATTTTTCTTTCTTTTTTGTACTAGTACTACGTGATTGTTATATTGAAGTTTTGTTTATGTTTGATGATAATCTTTTACGAAATATCTTCCGTGAGTTAAAATTATTTTAGTGAATTATACTGTAATTAGCATTAAAAACTAAGATAATAAAAGGTTAATTAGTTTGTCAGACAACTTTTTTCATGGTTCGTCTGATTAAGGGAAGGATCGAGAATAAAATTAGAGAAGACAATTATTTGTAGTATTCTAATATAATATTAAGTGGTTAACTGTACAGTGGAAGAAAAATAGTAGTAATTGTGTGTGAGTTAATTATAGAAAGAGATTGATTATCCATTATGATGGACTGACGTAAATAACGAAGCGACGGTTTTGTTGGTATTATAGATGGTCTATGATAGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAATTCTCACCTGAGCAGGAAAATTTACAGTTTCCCAAAGATGGAGAACCAACAAGGTGATACACCTAAAGTGGTGTGTGTTCCTCCGAAGAGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAAACTACATCGTAAATGCGGACAGAAGCAAACAGAGTTTGAGTGAAGAAAATATTACTGTTAGCATAGTTCCAAAGGCAGGCAGTTCGTGGACAGAGGGTAGAAGGGAAACAAAGGTAGATGAAAAGAGTGAAAAGGAGAAAAGTAGCGATGAGGAGATCTTAAAAGTGTGTGAAATTGAGGGCATTGAAGAGGGGATGAGTGAGATGTTGGAAAGTTGCTTGGCAGAAACATGTGGGGTTTGGGACATAAATGAGGAGAGAGAGAGTAATGATATGGAAATGGTGGCTAGTGGTGATGCGTGTCTCAACAAAACATCGTCGTGTGATAGTAGCGTCAACGGTTATTCGTCTTCTTCTTCCGTGGCCCAGGGCTTGGATCAACACTGGGATTGGGAGAGCGTGATAGAGTTCAATAACATTGTTGAGTCCCAACTCGCTTCTGACCATTTTAATCACAAAGATGAACTGCTCACGTGGCTGTGGGAGGACGACAATTGGGTGGGAGAGACAGATTTAAAGATACAAGACAACGTCGTCGATTGGCTTCTCTCTTGA