Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29850	LG8	31095457	31097124	PREDICTED: DELLA protein RGL1-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	31095472	synonymous_variant	p.Ala551Ala
A/C	31095519	missense_variant	p.Cys536Gly
T/C	31095520	synonymous_variant	p.Lys535Lys
T/A	31095522	stop_gained	p.Lys535*
A/G	31095591	synonymous_variant	p.Leu512Leu
T/C	31095757	synonymous_variant	p.Gln456Gln
C/T	31096111	synonymous_variant	p.Lys338Lys
G/A	31096164	missense_variant	p.His321Tyr
C/A	31096196	missense_variant	p.Cys310Phe
A/G	31096214	missense_variant	p.Ile304Thr
T/A	31096298	missense_variant	p.Asn276Ile
G/C	31096443	missense_variant	p.Gln228Glu
A/C	31096483	synonymous_variant	p.Gly214Gly
G/A	31096680	missense_variant	p.His149Tyr
A/T	31096689	missense_variant	p.Tyr146Asn
G/T	31096713	missense_variant	p.Leu138Ile
G/A	31096965	stop_gained	p.Gln54*
T/A	31096999	missense_variant	p.Gln42His
T/G	31097000	missense_variant	p.Gln42Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29850.1

MGSGPFSFTPFKFNEFLGGYGSIQGEDVVLQREHTFSSTTEQLTGIDTHVDQTQKQQRSFDFDHVMTEEFNFESVQPPKKSSFQETKGQKDKQVLPSSLASLELLRNYGSRFNKLGTQNIRCSVETCFSPQKLSTEELIRLAGARYLQHSTQWHHDICIPVHPYGMSLQVLSEEENRGVELAQFLLAAVDRVGCQQFERASMLLSHLLWNSSGGGGSPVQRVVFHFSQALLERIKRQTRGKVTLNKCEKNKEREMIEKLRLDTNMAVTCHEKIPFNQVMQFAGVQAIVEHVAFQTRIHLINLDIGCGVQCTALMQALVERHERQVELLKITAIGLQGKTRLEETGKRLVSFAESLNLPFLYKIVFVRSITEIKAEQFGIEDDEAVAVYSPYMLRTMVSDFVSLEHLMRVMTKIRPTIMIVLELEAKHNSPSFVNRFIEAFFFYAAYFDCIYTCMKQDYECRMRIEGILSEGIRNIVAMEDGERKVRDVKIDVWRRFFARYRMVETTFSDSSLYQANLVTKKFECGNFCTVERNGKCLIIGWKGTTIHSISAWKFL*

CDS Sequence:
>Vu_29850.1

ATGGGAAGCGGTCCTTTTTCCTTCACACCTTTCAAATTCAACGAATTCCTTGGCGGTTATGGCTCAATACAAGGAGAGGATGTTGTGCTCCAAAGGGAGCACACTTTCTCTTCAACAACGGAGCAACTAACAGGGATAGATACTCACGTAGATCAAACTCAAAAGCAGCAACGTAGTTTCGATTTTGATCACGTGATGACAGAGGAGTTCAACTTCGAATCTGTTCAGCCACCAAAGAAGTCTTCTTTTCAAGAAACTAAGGGACAAAAGGATAAACAAGTGCTGCCATCTTCTCTAGCATCATTAGAGCTCCTGAGAAATTATGGAAGCAGGTTCAATAAGCTAGGGACGCAAAACATCAGGTGTAGTGTTGAAACTTGCTTTAGTCCTCAGAAGTTATCAACTGAAGAACTAATAAGATTGGCCGGAGCAAGGTATCTTCAACACTCTACACAGTGGCATCATGATATTTGCATCCCCGTGCACCCTTATGGAATGAGCCTTCAGGTTTTATCGGAAGAAGAAAATAGAGGCGTGGAGCTCGCTCAGTTTCTTCTGGCAGCTGTTGATAGGGTAGGGTGCCAGCAATTTGAACGTGCCAGCATGCTACTTTCCCATTTGCTGTGGAACTCCTCAGGTGGTGGTGGAAGCCCCGTTCAGAGAGTTGTCTTTCATTTCTCTCAAGCACTTCTCGAAAGAATCAAAAGACAAACGAGAGGAAAAGTGACATTGAACAAGTGTGAAAAAAACAAGGAAAGGGAAATGATTGAGAAGCTAAGATTGGATACTAACATGGCTGTTACGTGCCATGAAAAAATTCCTTTCAATCAAGTAATGCAGTTTGCTGGGGTGCAAGCAATTGTGGAACATGTGGCATTTCAAACCAGAATCCATCTCATAAACCTTGATATTGGATGTGGGGTGCAATGCACAGCTTTGATGCAAGCACTGGTTGAGAGGCATGAAAGGCAAGTTGAGCTTCTGAAGATAACTGCCATTGGACTTCAAGGTAAGACCAGACTGGAAGAAACAGGGAAAAGGTTAGTGAGTTTTGCTGAATCCTTGAACTTGCCCTTTTTATATAAGATAGTTTTCGTCAGAAGCATCACAGAGATCAAGGCTGAGCAATTTGGAATTGAAGATGACGAAGCTGTAGCTGTTTATTCTCCTTATATGCTGAGGACGATGGTGTCGGATTTTGTCTCTTTGGAACACTTGATGCGGGTGATGACAAAAATCAGACCAACTATAATGATAGTTCTTGAGTTGGAAGCAAAGCACAATTCACCCTCCTTTGTGAATCGCTTCATTGAAGCATTTTTCTTCTATGCAGCATATTTTGACTGCATTTACACCTGCATGAAGCAAGATTATGAGTGCAGAATGCGAATTGAGGGAATATTATCAGAAGGGATACGGAACATTGTTGCTATGGAAGATGGAGAAAGAAAGGTTAGAGATGTAAAGATAGATGTTTGGAGAAGATTCTTTGCAAGGTATAGAATGGTGGAGACTACATTTAGCGATTCATCATTGTACCAAGCTAACTTGGTTACCAAAAAATTTGAGTGTGGGAATTTCTGCACTGTGGAAAGAAACGGGAAATGCCTAATAATTGGATGGAAAGGAACCACAATTCATTCAATCTCAGCTTGGAAGTTTCTTTAA

Promoter Sequence:
>Vu_29850::LG8:31097124-31099124(-)

ACAATTTTAAGTTTTTATGAATATTTTAATATTGATAGTTTTTTTATTGATTTTTAAAATATTGAAAGAAGTTATAATAAAAGAAAATAGTGTCACACGTAAATCATACATATAATGTCAACGTATATTGTTTTTAAAATAGATACGTTAACCAAAATAATAATATTGCCAATACTTACGAATACCATCATTACTATTTTTTATGAATTTTTCTTAAATCTCATTTAAGATAAACTATAATGTTAGTTAGAATAAATCCATTAAACGTGTTATTTATTGAAAGGATACAGTAAAACTAATGAATGAAACTACATTATAACTTGATTTTAAATTTTGCAAAGATCCTAAATTTCTATAGACAATCAAGGTTAGCTGACACAGGTGAGGGGTTTTAGTGGGTTAACCTATTACATTGCCATTTATTGAGTTAAAATGTAATAACAGTGAAAGAGTGTTTACAGATATAATTACTTTTACGTTTATATAATCTTTAATATATTAGATACGGGACTGTGTTTTCTTTCGATATAACCCTCAGTCTATTTAATTTAAACTTAATTAGTAGGACTCTTTTAGTGTAAAACTATTTTGTTTAAACTTAATTTCGAAGTAATTGGTGCATGGATCTTGACATTTTCTTTCTGGCTGTTTCTTCCACCTCCTTTTATTCTTTCTGCACCCCTATAAATCCCATAAACCTTAAATTATTCCTCATTTTAAAATTATGAAAGGTAAAAGTTACTCTGAAATACATTTAAAAAATATATTTGACATGTGTATTTCAAATCGTATTTTCATATTTGAACATATCTTCTTGCATGTTTTGAAATATATTTTTTGAATACATTTGAGTGTATTTCTAAATTTAGAAAAACCTTCCAAATCACGCAATCTAGCATGTATTTTAAAAACATTTTTTAAATATATATTTGGATCCAAAAGTATACTCTAAATATGTATTCTAAAATACATTAAAAATAAATCTTCTGAATCAGATGTTCCATAAGGTATTACCGGATTGGGTTGCAACAATTTCTTATATTTTTCTTAAACCATGTGGGGTTAGTTTTGTTCTCATCCTTAAATTATGCGCACACACATCTACCTCCTCATCATCTAGCCTATTTTCTAGTTGTTTGGTAAACTCTTTTCCATGACTTAGAATTCACTGCAATGACATGTAGAAACTCAAGCATAGAATTTGAATAATATAGGAATGGTGTAATGTAGGTCATGCGTTGAAGGAATTTGTTGTACGGGTAACTCAAACTTTCACAATTTTTCTTTGGTGTTTCTTCACTTTTTTTAATCTAAACAATCTAACTTTCCATCATTTTTTTCTCCATTTTCATCTTTTTGACTCCCTATAATGCAAACAAAGTATTAATTGAAAAGAAGAAGTACTTCTTTTTCTTTAGTTTCAACAAAATGGTCTTACAATTAAAAGCCTTCGTATATGCATCCTACCAGACTAGACAAAGACATATGGCCATAAATATAACCAAAAAATTCCTAGGAAACATCTCATAATGTAGCACAGTTCCTGCTGCAGGACAAATTTAGTCTTAGCCAAAGGATCTAGAGATATACCATCAGCAATCTATAGCATATTTCTGGTATTTTTGTGCATGGTAAAGTCTGTCTGGTATTGTGGGACTTTTCTTGGAAATGGCCACTCCCTAATTAAAAAAGGCCATCCATCGTTTTCCTCAACTCTTTGGTCACGCTGGCTGAACTTCTTAGGAACACTTATCGGATTAAAACTTTTAAGTATTACTCATAATTTGTATTGATTCGAACATTTGTTTCAATAATGATAAACCAACCATGGATGACGGCGGCATTTGATTTCTTCTAGAAATATTATATATCCCCTCACAAATATTCCTTTCCGACCATGAATAATGATTGTGCAAACACCATTGTCGATATTTTTCTTTATAAGCTCATTCTCTCGAGTTTAAATTGTTAATACCCTCCAAGATTTCAGCTAACGCAAC

Gene Sequence:

>Vu_29850(-)