Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29962 LG8 32427435 32428250 zinc finger CCCH domain-containing protein 3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of gene expression, mRNA processing, mRNA processing, plastid organization
Cellular Component   is active in   U12-type spliceosomal complex
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, zinc ion binding, nucleic acid binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03041 Spliceosome [BR:ko03041]
SNP Position Effect Amino acid change
A/G 32427488 synonymous_variant p.Arg4Arg
C/T 32427653 synonymous_variant p.Leu59Leu
T/C 32427713 downstream_gene_variant
C/A 32427801 missense_variant p.Pro85Gln
G/C 32427966 synonymous_variant p.Val92Val
C/T 32428062 3_prime_UTR_variant
C/T 32428075 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29962.1
MPARKYYCDYCDKQFQDTPADRKRHVNGIQHLQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPTPNNTTQHAPIPLPGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG*


CDS Sequence:
>Vu_29962.1
ATGCCAGCAAGAAAATATTACTGCGACTACTGTGACAAGCAATTCCAAGACACACCAGCTGATCGGAAACGACACGTTAATGGTATTCAACACCTCCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCTCCCCTTTGCTTTCACTTCCTCAACACGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAATACTACACAGCACGCTCCAATTCCCTTACCAGGGAATGTGGTAGGAGTGTCATTGGGAAATTTGCCCCCGTCGTTGCAGCCTCCGCCGGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG


Promoter Sequence:
>Vu_29962::LG8:32425435-32427435(+)
GCTGTGAGTATCTAACTTGTCAAACGTTTAGTATCTCACTTTAGGAAAAATATAGCATTGGTTCCCTCTTTCAGATAATAGTTTTGCAAGATTCTGTTTGGCAATGACTGTTTTTCATCTTCTGATAATGTCTGTGTAATTTGAGATTTTGCTTTATGTGGTTCAGTTAGATGCTCTGACGCATCCTTTCTTTGATGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTTAAATCTCATGGTATGTTGACTTTGGAATAGGCTATTGTGTTTGTGACTCCGCTCGTTTTTTCTTTTCATTAAATAGTTTTTTGCTGAATTTTTGTATGTTATCTGTGCATGTGTACCAGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAACATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGAAAGTTTAACAGAACTTCAAGTGTTTCCGTATGAGAATGCTGCGCTTTCTTCTATTTGATGATATGATATGATATTTGTTGGTATCTTTATTGTATTCGGTTGCCCTGTAAAAGCAGATCTAGAGATACATGCTACTCCTTATTACCCAACCCCCGAAGGGTATGCAGAATACCCTGTTTCCTGTATCACAGCAGATTGTAACATACAATAGAAGACAAATGTCTGCAATTATCTAAATGTGGCATCAGTATTTGTATTTGTTGAGACAATGATGGGTTGTTTAATTTAGTTAATGCTTAACGTGGTGGTTGGAAGTTGTAGTGGCCTTGTCTGTGCATTGTTTATTTTCCATTCTTTAGGTAGTCTCTGGCCGAACGACATGGGACGAAGTCTCGGGCTTGTCTTCAATGAATTGGCTCGATTGACAAATATTAAACGTAGTAAGTGAAAGCGATATTTCTCATAGTTTAATCAAACAGTTAGAATAGAAGACTGGCTCTTTGTTTATTTTCTATTCGAGGCTGAGGTGTCTGAGTGGACTGATGCGGACACTGAAAAAAGAATTTGGATGTGTCTCTTGCCATATGTACAAAGAATATATACAAGAATATATACAAGCGCGTTCTGGTAAGTCACAATTTGCTTTGTTGTTTTATTCTCTCTTTCCCCTACGTTAAGAATATCTTCGTCAACGGAGGCTATATTTTCCATGAGGCATTTTCATGTTAATAGCTATTCTTTAACAACTTTGAATCTCAGTATTCATCAGCTACTTTGGTTAAGGGGTCTAACGTCAATTTGGTTGTTTCTGTCGTTGGCTTCTTTCTTAGCATATGGGATGACTATTGACCACTATTTTCTTGCATCTAATTTTTTGTCTCTAATGATGTAAAAGTGAAAGTAAGTTTTCATTTTATAGATTAGAATAATTTTTTCATCGTAATCATATGTTTCCCGTTCTTTTTTTAATATAAAGTCAAGCAAAATATCTTTACTCTTTATGTAACTCTAATCAGAGGATTTTTTTTATTCAGATTCCTTGGTTATTTATTAAAAACTCAAATTTCAATCAATAGAAAGTGCAATGAAATATTTTATAAATCACTTGCTAGAAAACGTTTTATTATCTAAACTAATTTTTAATGTATATTTTAAATAAAATAATTTTGTTCCGTGTTTTTCATTCAACGTAAATTTAGATATTTTGATAAGATAAATTATAAGCTAATCAAATAAATTATAAGTTGGCTGATATAAACAGTCAAACATGTTTTTCGATAAATATTAGTAAATAATACATTATATTGTTAATAGAAATTCCAACACCTAGCTATCATTTTCTCCAAAAAGATATATAAAATATAATGTGTTTCGTTAATAAATATAAATAATTTATTACATTTCTAGTTAATATATAATTAGAAAAATACTAAAAGTCGGTGGCCAAGCCGTAGAGATATGGAGAAGTTTCCGTGAAATTTAATTTATCTACTTGATCTCGCTTATAATAAAATAATAGAATTTGTTAATTTATTTAGA


Gene Sequence:
>Vu_29962(+)
ACTGAAAGCGAAGGTGGTGGTTGAGTAAGTGCGAGGGTGAAGATGCCAGCAAGAAAATATTACTGCGACTACTGTGACAAGCAATTCCAAGACACACCAGCTGATCGGAAACGACACGTTAATGGTATTCAACACCTCCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCTCCCCTTTGCTTTCACTTCCTCAACACGGTACGTTTCCTTACGTTACCACTTCTCTTCCTTTTTCAATTTTCATTTCTCATTCACTCTCTCTATTTTAGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAATACTACACAGCACGCTCCAATTCCCTTACCAGGTAATTAACCAATCGCTTATCACTTTCTGCCCTTCAGTTCGTCTCCTATATGAAAGTTAGTCAAACAACAACTACAACTAATTTTACGAATACGTCGTTTAATGATGTACAAATATTATATATATGTGCAATTCTGCATGCAGGGAATGTGGTAGGAGTGTCATTGGGAAATTTGCCCCCGTCGTTGCAGCCTCCGCCGGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAGATTTGCAGCTATTGAGTCCCTGTGTGTAGGGAAGAACTCTGTTCATTTTTCTTTGTTATTATTATTATATTATTATTTAACTTTTTATCTCCCATCACATAACCCCACAACTTATTTGGAGTTTTCATGTATCAAACGCTATCCAAATCTATCTTAATGTTCAATCAATACTAATATAATATAATTTGATAGTG