Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30086	LG8	33584003	33587035	PREDICTED: serine/threonine-protein kinase CDL1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein-containing complex assembly, protein phosphorylation, response to light stimulus, protein phosphorylation, response to cold, response to cold, tetrapyrrole metabolic process, protein phosphorylation, protein phosphorylation, protein-containing complex assembly, tetrapyrrole metabolic process, phosphorylation, protein phosphorylation, phosphorylation
Cellular Component	located in	mitochondrion, mitochondrion
Molecular Function	enables	protein kinase activity, protein kinase activity, protein kinase activity, ATP binding, protein kinase activity, protein kinase activity, protein kinase activity, ATP binding

SNP	Position	Effect	Amino acid change
A/T	33584012	missense_variant	p.Asn4Tyr
G/A	33584020	synonymous_variant	p.Thr6Thr
T/A	33584059	synonymous_variant	p.Ser19Ser
G/A	33584073	missense_variant	p.Arg24His
A/G	33584159	missense_variant	p.Thr53Ala
T/C	33584190	missense_variant	p.Phe63Ser
T/C	33584196	missense_variant	p.Ile65Thr
A/G	33584709	missense_variant	p.Tyr143Cys
G/A	33584888	downstream_gene_variant
C/A	33584947	downstream_gene_variant
A/G	33585040	downstream_gene_variant
T/C	33585049	downstream_gene_variant
A/G	33585108	downstream_gene_variant
C/G	33585110	downstream_gene_variant
C/A	33585802	missense_variant	p.Pro260Thr
T/A	33586133	downstream_gene_variant
A/G	33586444	downstream_gene_variant
A/G	33586459	downstream_gene_variant
T/A	33586505	downstream_gene_variant
T/A	33586525	missense_variant&splice_region_variant	p.Leu356His
T/C	33586580	synonymous_variant	p.Arg374Arg
C/T	33586681	downstream_gene_variant
C/A	33586835	downstream_gene_variant
T/A	33586840	downstream_gene_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30086.1

MEVNTTATVPAGPPAKNHSFTQHRLHSERHRHSHGHFPTKTILITVSFVTLVTVLFVIFVVLFLIRRQKSSSKSGTCKEDSTELHDTSSRLITSSTLNSSPEVKSGCLHGGNLGRTPAPTFRGVQVFTYRELEIATDGFSERNMIGGNGGHGLMYRGVLSDGTLAAIKLLRSEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPDGTLHHHLHSPNDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKTNNVLLDQNFRAKVSDFGLAKMGSEKKNGQVSTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAQGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVAQKHEQYHTQWGAPPNWQGPMEFPHLYSLK*

CDS Sequence:
>Vu_30086.1

Promoter Sequence:
>Vu_30086::LG8:33582003-33584003(+)

ATAATAAAAAAAAGGTGAGGGTTATCAATCTTAATGAAATATAATTACAATTTTATAAAAATAAATTACTTTGAAATTAAGAAAATGTAGTTGGTATCAACCATGACGAAAGTATGATTTGTTGTTGATGACTGTCACTAGGGACAAAAACGATTCACATAGATTTAGTGACAATGTGTTATAATCTTATTTGAGTGAAAAGAGAATATGTCAATTATTCAGCCAAATCTTATACTGAGTAATATGAAAAGGAAAAAAAAAGCAAGAACAAATAGTAGATTTGATAATTATACAACTCCGTAAGTCTCTCAAGTGTATTGAGAGCTTAAGTAATAATGTGTTACGAAAAAGTTTAGAATTTTGTTAATAAAATTATACAAATACAAGAAAATTTGTCATTTTTTTTCTAGAAAGATTGTACAAGAAGAATTGCAATTTTTATTCAGAAAGATTGTATAAAAAGGTTTATAATTTTTGTGAGAAAAAATTATAAATTTGTATATTTATTGATTTTAATATATTTTATGTTTTGGCACCTTCAAAAACTTTATACATCTATCTCGGGATCCAAAATTTTTTATTTTCTGAAGATGCGCCACTAAGAACTTGTATAAAATAATTTGTGAATAATGGCATTTATATTTTTAGGAAAGGTAATTTATTTTTATGAAATGTGATATTAAGTTGATTGAGTGGAATTTGATGTAGTATTGGTATTTATTTAGTAGATAACCCTAATGTTGTGGTAAGAGGAAACGTGTTGATTAGTTGTAAATGTTATTTGGTGACATGGGAAGGAAGGTAGGGCATTAGCAAATGTGTTTAAGTTTGAGAGAATGTTTCCCCTTTTGGTCTTTTCACGACTTCACTTTTTGCACGACTCAAAGGCACGTGATTGCGAGCCATATGATTGCCAATTTTCCCTAACAATCCATGTGGGGGCTTCTTCTTTCCACTCCATACAATTTACCTTTTTTAAAAAGTTTAACTATGACAAAATATGCCTATTTCACTCCAACATCTCCTTAAAATGGAAAAATAGAAAGAGAAAAAAGAAATAATAGAAAAATGGTTTAATTAAAACAAATATCATTTCAATGGATAGAAAGAAGAAAACATAAGCTAAAATGTGCATAATCAGGTACTCATCCTGAAAAAATAACAAGCAGGGGACGAAGACCAGGGTAAAATAGCATATTTCAGCTGCTAATTTAGATTAGCTAAATGCAGCAAGTTTATTTGTCATTTTGTCCCCTTCTTTAACTAGCCTTCAAGCCAAATGAAGAAACTAAATCATATAAAATGATGCATGATGGAAGTGGTTTACTGAACCAGGAACTGGAACTGGTTGTTATTGAATTCGGGGATTTTGAGTTATGCAGGTGGTAATTGGATTGTTGTTATTGGCAGTTATTGGTGTGAGATGGCAAAGTTACCATACAAACTCACCTCCTTGCTCCACTCTTAACAGTGGTGGAACTGGTTGACCGGTGACCACGCCCTGCAGCAAAAGCAGATATAAATTGATTGATCAGCCAGCCAAAAGCATAATTATCTTTTCTGTTTTCTATTTCCAAAGAAGACCAAGAAAAAGATACGCTACAAATGCATTCTTGTTTTAGGAAAACAGAATGCGTATGATATAAAATTAGGGAATTATTAGAGAGAGCAAGAGTGAAAGATTGTGCAAAAGCTTCCGAGATTTTCTTATGCAAAGAAAAAGACAATTCTTCAGAAAATAACAGAAGAAGAGACAAAGGAAGTACACCAAAACCACTTAATTAAATATTCACGAGAGGCTGGCTTGCCCTCCTAGGAAAGGAGGCTTACAACTAGCAAAATGCTTGCACCCTCATTCTTTCGTTTATTACTGTAAACAAAATCCATTTCGGCATTCCCCACTCTCCCCATCCTCTTTTATTTCCTGCCTTCCAATCTCAAACTTCTTTCTCACCTCAAACACACAACCCATTTACTTTTTTTCTCTCTGTTGTCAGTCA

Gene Sequence:

>Vu_30086(+)

ATGGAAGTTAATACTACGGCCACCGTACCTGCAGGGCCACCAGCTAAGAACCATTCTTTCACACAGCACCGCTTACATTCAGAAAGACATAGACATAGCCACGGCCATTTCCCCACCAAAACCATTCTCATTACCGTCTCATTCGTTACCTTAGTTACGGTCCTATTTGTCATTTTTGTGGTCCTATTCTTGATCCGTCGCCAAAAATCTTCCTCCAAAAGTGGCACTTGCAAAGAAGACAGCACAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCAACGTTGAATTCTAGCCCAGGTAACTAGCTTCCTCGTCACATGATATCAATGAATTGCAAACAGTATCTTAAATACTAATTAGTGAAGCAATACTATAACTATGTGCAAACTTAGAAGAGTTAATTTGCTAGCAATTACAACTGCATAACTTTCCAGACTGCAGATGATCATATAAATTTGTCTCTAGCATATCATTAATTCATTAGTTGTTCTTAACATTAATTCAACTAGTCTTTGAGGGGTGAGGCTTTAAATTCAGAAGCTAATCCATAAATGCTTGGAGACATTTATTGTAGAAGTAAAGAGTGGGTGTCTTCACGGGGGAAATTTGGGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTCACATATAGGGAACTAGAAATTGCTACCGATGGATTCAGTGAAAGAAATATGATTGGTGGTAATGGAGGACATGGCTTGATGTATAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGCAGTGAGGGTAAGCAAGGGGAACGTGCCTTCAGAATAGAGGTGAGTCAGTGTGCTTCATTTAATGAGTTACTATATCCTCTTCTTTTCAGCATGCAGAGATTGAATTATTTCTTGTTGTTACTTGCACCTCTCTCTCTCTCCCAATGTCTCCTTTCCTTGTATTAGATCCAGTTTGTTCAGAGACTTTGTTTTTGTCTTTTGTTAAGCTCAAACTAGTATTGCTTGCCTAACAAAATTTGTAAGTCGTAACGAAATGTTTACATTAATGTGAAAGGAATTTTACAAACTATCACGTGACAAACTTCATATCCTACTAGCAGATTATTTATCCCTTAATGGTTTGACATTTGACTCCAGCAATTAGGGATATAAATTATTCTTAGGTTTTCTATATATAATATCTTAAAGTTTTAACCTTTCTGCATCTTCTAACCTAGAAATTTTTGTATAGTGTGAAACCATGTCAAAGATTAAAAAAATCATTCACAAAATTAAAATAAGTTAAAAAGATTTAAGTCATTTGAATAATGCACTACTATTGAATCAAAATATTAATAAAATTTATTCATAGGTCATTAAAATACAGACAATAAGACATTTCCCGTCAGCGATTATCCTTTTAAAAGAAATCTCTGGCGTTTTGTAACCAAATTTGGGACCATCAAAATTGGAATGAACATCCATTTACCTTTCTATCAGTCCATCCCACTTGCCAACTCATATTGTGAGCTTTATTCAAATCCAGCACATGGGTGTGAAGACTAAATGACATTTATTGCAGGTCGATCTCCTAAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCGATGGTACACTTCACCACCATCTTCACTCCCCCAACGATCAAACTCAACCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCCAGGGCACTGGAATTCCTTCATGAACATGCAGTGTCTCCGGTGATCCACAGAGACTTCAAGACTAACAACGTTCTGCTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAGAACGGTCAGGTTTCCACCCGTGTATTGGGGACCACTGGATATCTGGCACCAGAGTGAGTATTACAAGTGCCCCATTTCATCTGTCATTTGGAAGCGCCCTGCCTTATCTTCATTCTCCACCCAATCCCAGTAATTAACTTACAACGTTAAATAAAGAACCTTGCACATGGTCATAGTCAAGTCCTTATCAAGCAGGCTGTGATTTTGAATTTTATCTATGTACATGTCATAAAAAATTTATACTGCACACCATTCATGATATATTTACAACTTCTTTCATAAATTATTGCATAAATTTAATTTGTCCCTTAAATTTGGGCATGATGTAGGTACGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTGCCTGTTGATATCAAGCGGGCCCAGGGAGAACACGTCCTTGTCTCTTGGGTTAGTAAATAGCACCCTGCAATTTTGAATAGAATAAAATTGATTATGCAACTTTTGTTTAAAGAAATCAAAGGAGATACAAACAGAGTTGAGAATTAAGTTTCTAGTATTGCCAAATATTAATTTTGTAACATAAGATTTTATGCATTCACCAGGCTCTTCCACGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGATCCAGCTCTACGTGGACAGTACTCAAAGAAGGATTTAATTCAGGTCAATTTTTCGTTTAGTCATAGATTCTCTCATCCTCATCACTGTCACTTAATGTCTTGGACTAACCATACTTTTCCTATCAAGTAACATTTGCTTTCTGCTTCTATGGGATTTTGCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTAATACCACTTGTTAGGAACCCATCCTCCCTTAGTTCTAGCTCCCTACGATTTCAGAAACAAACACCAAAGAGCAGAAGCAGCCTAGAAATAAACTAACCTAGTGTTACACTAAACTAGCCCTTGGACAAACATTAGGCCCAAAAACACGAGCAATATCACACTCAATGGGGGGCACCACCGAATTGGCAAGGTCCAATGGAATTCCCTCATCTCTACAGCCTTAAATAG