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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30166 LG8 34367925 34372685 PREDICTED: transcription factor UNE12-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 34368243 5_prime_UTR_variant
G/A 34368244 5_prime_UTR_variant
T/G 34368422 missense_variant p.Met38Arg
C/A 34368697 intron_variant
T/C 34368746 intron_variant
T/C 34368755 intron_variant
A/G 34368839 synonymous_variant p.Gly130Gly
G/A 34368890 synonymous_variant p.Ser147Ser
G/A 34368899 synonymous_variant p.Pro150Pro
G/A 34368973 intron_variant
T/A 34369095 intron_variant
A/T 34369096 intron_variant
T/A 34369288 intron_variant
C/T 34369421 intron_variant
G/C 34369464 intron_variant
T/G 34369468 intron_variant
G/T 34369509 intron_variant
G/A 34369536 intron_variant
A/G 34369628 intron_variant
A/G 34369643 intron_variant
C/T 34369687 intron_variant
T/G 34369775 intron_variant
A/C 34369782 intron_variant
G/A 34369831 intron_variant
C/T 34369895 intron_variant
G/C 34369902 intron_variant
T/A 34369976 intron_variant
G/A 34370033 intron_variant
G/A 34370121 intron_variant
G/A 34370175 intron_variant
A/G 34370186 intron_variant
A/C 34370257 intron_variant
C/T 34370258 intron_variant
G/A 34370259 intron_variant
G/A 34370281 intron_variant
A/C 34370282 intron_variant
T/A 34370290 intron_variant
A/T 34370291 intron_variant
A/G 34370390 synonymous_variant p.Gln181Gln
T/C 34370408 synonymous_variant p.Arg187Arg
G/T 34370536 intron_variant
A/G 34370569 intron_variant
A/G 34370638 intron_variant
T/C 34370814 intron_variant
T/C 34370837 intron_variant
G/C 34371090 intron_variant
G/A 34371187 intron_variant
A/G,* 34371223 intron_variant
A/C 34371252 intron_variant
G/A 34371359 intron_variant
G/A 34371365 intron_variant
C/T 34371371 intron_variant
T/A 34371372 intron_variant
T/C 34371417 intron_variant
C/T 34371482 intron_variant
A/C 34371497 intron_variant
C/T 34371544 synonymous_variant p.Leu257Leu
T/A 34371605 splice_donor_variant&intron_variant
C/T 34371622 intron_variant
T/A 34371623 intron_variant
T/A 34371625 intron_variant
T/A 34371951 missense_variant p.Trp290Arg
G/A 34371959 synonymous_variant p.Lys292Lys
G/A 34372076 synonymous_variant p.Ser331Ser
T/A 34372230 3_prime_UTR_variant
G/A 34372408 3_prime_UTR_variant
A/C 34372465 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30166.1
MAGNSSSEGLGDDFFEQILAVPEAPVGYGRTVATDVGMLQLGSTTPTAAALRGGGMMPLGLNLEQSAFLSHHDSRNLVDDVVNVDPTVHNNHHHHHQHLTLHNNNSSPSSTPPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPQLHLHHHNQQAFQGQGGGGPASMSGTQQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGSNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH*


CDS Sequence:
>Vu_30166.1
ATGGCAGGTAACAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCCGAAGCTCCAGTTGGATATGGCAGAACCGTAGCCACTGACGTTGGAATGCTGCAATTGGGGTCCACAACTCCAACTGCCGCTGCTCTCAGAGGTGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCCTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCACCGTTCACAATAATCACCACCACCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTTCTACCCCACCAATCACCGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCGCCGCCTCAGCCACAGCTCCACCTCCACCACCATAACCAACAGGCGTTTCAAGGGCAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACCCAACAAGCACCTGGCATTCGTCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACACAGTATCGCTGAACGGTTGCGTCGCGAAAGAATTGCCGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGGGAGGACATAGAAGGTGGATCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCGGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTGATCAAGCCTGAATCAAACAGTCACTGA


Promoter Sequence:
>Vu_30166::LG8:34365925-34367925(+)
ATCAAAATAGCTTTAATCAAACTCAACCTAAATTAAAAAAATAAAATAAATTTAACTGAAAAAACACTAAAGTTTATAACAGTAATTTTAGTTTAAACTGAAAATTATTAAAATTGTGTTTAAATTCACAATACTATCTTATTTTTCTTATAAAAGAATAAACTACACAAATTGAAAAAAATGACATCACAAAACACGACATAAATACAAGAATGAAAACTAAAAATAAAGTTATAGCTTGAAATATATATTTTTTTAAAACTATCACTTACATAAATTAGTAAAAAAAAAGTTATATAGATAAATATTTTTGAAGTAATAACCTATCCTTGAATTAGATGGCAGTAGGTTAAAAAAACAGTGAGAAATTGGACCTGCTTTCTTTTAAAAGTATGATGCGTTGTACACCACTCTCACTTCATTTCCTTTTTATATCACTCTCCACCAATCAACATTCATTTTCATATAAGATTTTTGTATCTACATAATTATACTTCAATTATAGATTTCATTAAACTAATGTAAACAACATTTTTATCCTTCTTTACATACTAAACTAATTTTCAATATTTTTTTCATTAATTTTGAGTTAAACCTCAAACTTTTAATCATTAAATGATAAATCCTAAAAAAAAAACACTCAAAGTGAGTTTGGTTCAAAATCTCTATCCAGTGAAGGAAGAAAAAAGAGCGCCTGCGTGGGCGTGCACGTAACAAGCACCATTATCGTTTGTGTTTTCTTTTTAAGAAAAAATAATAATATATTTTTAAATAAACTTTTTCAGAAAAAATGATGACATAAAATTTTATTTAATAGTTTTCTCCTTTTAATTTACAAATTTTAATAGACAGAAATATTTAAAAAAAAAAAGCGTTATTATCATTTTTTATTTAGTGCTGACCGAACAAACCTACATCATTTATATCTATATATAAAGAGATATCTCCTTTTATATATCCACAGTTTTTTTTATTTTATTTTGTATAATATAATTATTAGTTAATTTTTAAAATAATATAATTGTTAATTAATTATTTTTAAATCTTTTAGAAATAGTTACTATTTTAAAATATTTTATATAAATTTTTTATATGTTTCTTCTTTTTACTTTTGTATTATATTTTTTTACTATTAATATTAAGTTATTTTTTATTACTTTAATTTTTTCCCTTATATATTAATTTAATTAATTTACATATATCATTAAGTTATAATATAATAAATATTTAAAAAGTGTCGACACTTTTCTTTCTATAAATAGATACGGTACAACTTTCAAATTATAAATAGATATGTTATACTTCCATATTTTGCATTACACATTAATTTCTTTATTAAATGATAATATCATGAAAATATACAAATTTATATATATTATATGATAGTAACATTTATTATTACTTTTAAATAAATTGCTCTCACTGATCAGGCTGTTGGATCTGTCCACAATGGTGGTCATTCTTTCTTACATTTTTGTTGTGAGTGGACGCGTCTCTCTATTAGCATGTTTTTTCAAGCACATATCTTCTTCTTCTTTTCTTTAAGAGAATAAAAGATAAAAACTTTATTTAAATGATCAAACCCTACAAAATAATTGAATAAAGAAATAGATAAAAGTGAGAAATATAAAGTCTTAATGAATGATGGAATGAAACAAACTTTATAAAAGCTATTGAAAGAAAATGTAATAAAAATATATTAGAACCATATTTTTTTATCATCTTTATATATAATTTTTTTTCTAGTTTTATATGTAAATACATTAAAATGACACCTGACTATAAATCATGGACCGACTATATAAAGTTATTTCATACTATATATCTTATAACAAAAAAAAATAGTATGGAGTAACATTTTTAATTAATAACAATATAAAATGTAGATTATTAGTATGAATTAATAATAATATAAGAAATGTTTAGAATGATAATTGATGAAGATTGATTTGTTAATGTAAATATATATATATATATATGGGTTAGTGTAAATAAAGGCA


Gene Sequence:
>Vu_30166(+)
AGAGCGCACTAGGTTTGTCTTCTCTACTCCGTGCGTGGTCAGAAGCACTCAGAAGAAGCAAAAGCTGAAAAGCTTCAACTCTGAAATTTAAAGACCCATCCAAAGCAAACCACTGCCAAATCCAATCCTCTCTCTTTTTCTCTTGTTTTTTCCCTCACTCCTCAAATTCCACGGGAGAAGACACAAACGCAAAACATTCTCGGAAACCGTAACCCATATTCCATTCCCGGGTAATCGGGCTTCGGACCATCCACCATTTTCACAGACCGCAACAAGACAAGGCAACAACCTTCCTCGTTTTCCGCTCTTGCTGTTTTTGGAACAGCAAATGCCTGAATAAGAAAGGAGTGGCTTAATAATTTCAGACACTAGGTGGTTGTTGGAGATGGCAGGTAACAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCCGAAGCTCCAGTTGGATATGGCAGAACCGTAGCCACTGACGTTGGAATGCTGCAATTGGGGTCCACAACTCCAACTGCCGCTGCTCTCAGAGGTGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCCTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCACCGTTCACAATAATCACCACCACCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTTCTACCCCACCAATCACCGTAAGCACACATCACCTTTACCATCCTACATCTTCTCATACCCGAATTTCCTGATCATGGTCCAGTGCGCATGCATATTATAGAATGGTTTTATTTTATTTTTTTGGTTACAATTTTAGTTAATTTTTGTGCGTGTGCAGGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCGCCGCCTCAGCCACAGCTCCACCTCCACCACCATAACCAACAGGTAAACTACATCTTATTTTATTATTAATTATGATAATTAAATGTATTCGCCAATTGGGCACTTCTTTCGTCCCCAATAATTTACCTCTAACCTATATAAAGACAAATTATATTATAATACATTAACCTTAAAGTTGGGTCACTTTACAATGCATAAAGAAGAGATGCCTCTGGAAGTTTAGTTAGTGCTTCATCCTTCACCATTCATTCATTTCTTTATCATCAATAAAATACTTAATTTAACTAATCCTAATATTTTATGGAATGATTGTTTATTATATATGCCTTCCCTTTCTTTTCTTTTTACTAAACCCAAATTTCATGGGTTTAGAAACCATACTTTATAATTTTTCCCTTTCCCCGCGGATGCGTTTTCCTAATTTCACTCTCTATGACAGTATTCGCATTCCAAGAATCATTGCTTTTATTGCATTCGTGTTTAAAAAATTCCCAGATTTTGTTTTATGCTCAATTTTTTATCACGTCGTTTTTATATATTTTTTGGGTACGAAGTTTGTTGGATGTGTTATGCGATTTTAGGAGCATTTTTTTCTTTGTTCCATCTTCTGTTTTGAGGGTTTGGTTTCAGCAACCCGCAGTACTTTTCCGACAACGCGTTTTCTGTGCTTGTTTTCATTAGTAGAAGTAGATTGTATACTTTGTCACCACGCGTTTTTCTTCTACAGTACAATAGGCGGTCAAATTTTTGTTAATAAACTATGAGCTATTAAATGAAAGAAATTGGACTAAATTCGTTTTTCTAAATCGCACCGCTTATTGAAGAAAAATTATACACATGTATAGGTACTGATACAAATGATCAATATAGCCAACTGTCACGAAAGGGTGACTTTGTTTTAATTTCAACGCCCTTGTACTGGGTGGGACCCGTATTGACATGTATTTCTATTTTGTTAGGGCATGAGATTTTGACATTTTGCAAAGGCTAACTAACAAATGGGCACACTAATTAATGCCGTTGGATCCTGCGTCTTCTTGACTTTAAAACCTAAATTCAAAATTTTAATTGATAAATTGCAAAAGGAGAGAGAAAAATAATAAAAATATTTTTGTAGTTTAGAATGTTGAAGGGTCCTCCTATTCTTGTGGATTTTTCCATGCATCAAATATTCAAATATTGGAGGTGTACTTGTATTTATATGTTCACGTAAAGTATCATGTAGGTGTGCCTGCATGCATAAAACAGACATCTTCGGTTTTAGTTTAAGATTGTGGATTGGATGAATATACTATGCCACAAGTTGCAACTTTCTGAAATAATTACTCAATAACTATCAATATTCCTGTACATGGTAACGGTGATAATCAAGGTAATATTCGATTAGGTTTATTGAGTTACCCTGTGATGTTATTTAGGTAATGATCATGCTAATTGCAGGCGTTTCAAGGGCAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACCCAACAAGCACCTGGCATTCGTCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACACAGTATCGCTGAACGGGTAATTAATTAAGAACACACTTATTCTTAGAACTTACATGCTTCAATATTCACATAATAACAACCAAAAGGAGCCCATTCACTGCAAACAAGATTGTTTTATTAGTGATATTAATATATGCTCACTAGATTCCTTTGTCTTATCCGTCTATAACAATTCATCTTTTTTGTTCATTTGTGTTGGATGTAGTTGCGTCGCGAAAGAATTGCCGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATCAATAAGGTTTGGATTTACTAACAAATTTGCTATGCAATTTCACCGTTATTCACACTCTTGGATTGTGATTTGTATGCTTATATTTTCGGATTAACATACTATTTATATTTTTTCTCTTCATTTAGAAGTCATCATTTCTTTGTGTTTCCTAAGAAACTTCCATTTTATAAATAACAATTATGTTAAAACTTTCTAATAGCGTACACAAGGATGGATGCTTCTAAAGCCTTCAAAATAATGGGTTGAGAAAGTAAAATATACGGTTTTGTACTTGATAAGATGCATCCTTTTTTGGTTGCAGACGGACAGAGCGGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAGGTTAAGGTATGGAAGCTCTTAAATAATGTGTATTCCAATAAAACTTTCTTCGTTTCCATTCTTAATCTATATTCAAAATTTCTTCCTTTAGAAAAGTTAAGTTGAACTTCCGTTGATTTCTTTTGAAATCAGTCTCAGGCACATGATAAAGCTTTACTTGATTTTATTTTTGAGAAACTTGTTTCAAATTGTTGACTATCCGTACCAGTAGTGTACATGTTATGCTAAATACTAAATACTGTGAAATATTCATACTCATCTATATGGAGTGTGTGTGTGCATGGTAGACGCATTTCTCCGTGTGATCTTCCCATTGCAAAACAAGAGATGTCTACCAGATTTTTTTAATCTGCATAACATAATTTCTTTTTACCAATCATCTAAAGAAAGCAGATTAATAAACCTTCTGTCCTTTTCATATAATTTAATTTTATTGATATTTTGAAACAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGGTGATAAATACTCGAAAGCTGTTTGAAATGCTACTTTTCTTCTTCTTTTTTAGTTTCATACCTTTTTTACCATTTCAATCTACTTTTACTTTATTTTCTTCAAGCACCACTTGCAAATTTTTGTACCACGGAACGTATCTAAACCGGGATATGAGATAACATCATAGCAATCATATCACTGCGCACTACACATTTAAATTTATGTCAATTGTTTTTAAGTCTACTTTGTATTTTTATGGTGTTATTCCCATAACTTTATACACATTTTTCTATTTTGGTTCTTACAATAGTTTTATTGATCCTATCAGCAAGGGGAGGACATAGAAGGTGGATCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCGGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTGATCAAGCCTGAATCAAACAGTCACTGATAGAACGGAAGAAAAGTGTGGTGACAGACTTTACATAACTTTGTTTAGCCACATTTGGTCCCATTTCTTCCTCCTTTATGACAAGGGTATTATACTTTCTTATATAATTCTGTGATTGGATGGAGAAGGATATGTAGTCGATGCAGCTGTTCACTCTTCTCAAGTTCTGTCAAAGAAGGAGTAATTGCTTTTCCTCTTGTGTAAAACCAGAAGTGCACAGCATGTCCTTGTCACAGTGAAGATGAACATTTTCAATGGCCTTATTGATGTTTTTCTTCCTAATATCTGTGGTGGGGTTGGTGGTGGATGACCAAATATTTTTAGTGGAAGCTCTTTTCTTAGTATTTTGAATTTTAGTGAGTGGGAAGTGGGGCCATTTAAAAGGAAAGGATGGGTAGGCATGATTTATGTGGAGAAAACTTTAATACAACTTGAATTAAAATATGGTTATTTACCTTGTAAAGCTGTTTGGAAGCATCTGATAATTGGAAAAGCTAAAGCTGTTTTAAAATAATAAAGACATATTGAGTTTTGTTTGCTTCT

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