Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30946 LG8 42730916 42733101 PREDICTED: transcription factor LAF1
Map

Annotations  
category   relationship type   keyword
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 42731128 synonymous_variant p.Leu174Leu
T/C 42731173 synonymous_variant p.Gln159Gln
T/A 42731245 synonymous_variant p.Leu135Leu
G/A 42731247 synonymous_variant p.Leu135Leu
C/A 42731248 missense_variant p.Arg134Ser
T/G 42731252 missense_variant p.Lys133Thr
A/G 42731260 synonymous_variant p.Thr130Thr
C/T 42731879 downstream_gene_variant
T/C 42731918 downstream_gene_variant
C/T 42731919 downstream_gene_variant
A/G 42731955 downstream_gene_variant
C/A 42732401 downstream_gene_variant
T/C 42732496 downstream_gene_variant
C/T 42732497 downstream_gene_variant
T/A 42732524 downstream_gene_variant
T/A 42732531 downstream_gene_variant
C/A 42732643 downstream_gene_variant
A/T 42732944 downstream_gene_variant
G/T 42732950 downstream_gene_variant
G/C 42732953 downstream_gene_variant
A/T 42732958 splice_region_variant&intron_variant
C/A 42733076 missense_variant p.Gly9Val
C/G 42733077 missense_variant p.Gly9Arg
C/A 42733078 missense_variant p.Lys8Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30946.1
MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKQGHGCWSSVPIKAVQYHLSSVSECPFLYSNQWSQISQHLPGRTDNEIKNYWHSYLKKKEAKAKEMDSHNQIKYASSSSDTMESSNSLQNLATQGTQSCNFTKEASQSSLPKLLFAEWLSLDQVNSANSIDSFGLRNGFDQNSTIQEAAIHDMSDIPFGGGYHRCLANISAPEILNSELKYANQMAENGFIHCVPGVDLMSSNFSMSNDAIMYI*


CDS Sequence:
>Vu_30946.1
ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAACTCAGAAACTACATCCTTAAACAAGGTCATGGCTGTTGGAGTTCTGTTCCCATTAAGGCAGTCCAATACCATTTGTCTAGTGTTTCAGAGTGTCCCTTCTTATATTCCAATCAGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGATAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGAGGCAAAAGCTAAGGAAATGGATTCTCATAACCAAATAAAGTATGCTAGCTCAAGCTCAGATACCATGGAGTCTTCAAACTCTCTCCAAAACCTTGCAACTCAAGGTACACAGAGTTGTAACTTCACCAAAGAGGCTAGCCAAAGCTCCTTGCCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAATTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTATTCAGGAGGCTGCAATCCATGATATGTCAGATATACCCTTTGGTGGAGGGTACCATAGATGCTTGGCTAACATTTCAGCCCCTGAGATTTTGAATTCAGAGCTGAAGTATGCAAATCAGATGGCGGAAAATGGTTTCATCCATTGTGTGCCTGGAGTTGACTTGATGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATGTACATATGA


Promoter Sequence:
>Vu_30946::LG8:42733101-42735101(-)
TCTTCTGATTAATTTACGACTGGACGATCTACATAGTCAAAAACATAAAAGAGATCACTTCAAATTGAGTGAGTGACTGTATCAAACATACCAAATGATTATCTTTAAACAATGACTAGATTTCATAACAATTAACTTACGATAAAACATAATTAATACTAATTGGATTATGATTAGATTATAAATATTCTAAAATCTATAATAAAAAAATAAATTATTATATTTATTACTCATTAATTATTAACCTAGTCGAATCTTTATTAATTTTTAATATTGAATATTAATATCTTTTATAAATATCATTCTAGCTACGAATAGTGACGAAGATGAACGTTAAGACACATTATACTCGAAGAATAACCTCGACCCATAGTCGAAAGAATAGATGTACAGTCTCATTTTATCTACATCTATTGCATATTTATTTTTTCTTTCCATTATTTTTACTATCTCTTTAAGTATATATTAAGAGTTAAAACACTTTTATAGTGTCCATGAATAACTTTTCTTTTAAGATGTCCTTAAAGAAAACTTGACAAAACAATGGATATCACATTTGTGGGTTCATGCTCTTGTGACAAGGATGAAGATTTGTGGTGAAATTTTACCCACCTATTTCATCCAAGTTTACTTATTTTTATATTTTATCCTGATTTTTCCAGCATCAATCCAAAAACATGTTCCATGCTCATCCAAATTTGTACGATAGTTCCATCTGCAATAACATTGCAAGCCTTAATGACTCTAGTAAGGACAGTTTTCTCCTATTGCAACCTCTTCAGCACGCACACGCTTACCCGATTCGCTGTTTCTGCTGTTTATTTCATCAACTGCACACATCAGCCACAGAAAGAGGACAAAGACTGGTTTCTTAACTGCATAACTTTGAAATAAAAACTTTTCTATGAAGAAAAGTTTGATTAGTTTTGATTATATTAGTTTTTTATCCTCAGTTTTTGCTAACCATATCGTGCACTCCTTCAATTCAACAGTGGACACCAGTTAAAAGAACCACGTCCTGCCTCATTTGAAATAGAGTTATGCATTACCTGAAAAGCTAGATGCAAAACCCAGTCATGAAAACAATAAAAATTCATAACCTAAAGCATATTTACAGAAAGGGTTTAAATTTACACATGAAATACATATATTATTCTGATATGCATGGTAATAAAATGATCAGTTTTGTAGAGTCTTGCACGTTTGTTGTGTGTTTTGGCGTTACAATGTGACAATCAATGATCAAGTTTTATACACAGTCTGTTAATTGTTCTTGGACGGTACAGAATGTGTCGGCACGAGAGACGAATGTTGACTTGAATAAGCCTAAACTATTGAGTCTACTATACCAGTTCAATGAATAGTGCCCTCCAATTCATAGCTGTTCTTCTATTATTACCTCACTACCATTCACTCTACCTGGCTAAAGAACAGAATGAAGTTTCATCTGTTAAAATTAATTTATGTTAAAGGTAAAGTCTGAACACTCTTTTCATACCTTTCATAAACTGAAATAAGACTTTCATATTTGTCATAGAAGTATTCAAAGTATGCAATAAAGAACTCCAAAAATACTGCACCTAAAAACAAATCATGTAACTTTTGGGGATTTTGGACATGTGGTCTACTAAAATTGATAGCAAACATTGATACCACAAATTCCAACATTTTCCAAACTGCCACCCTTTGAGTCTGCAAAGGTGAATTTCAGGAAGGTGGAACAAGTTTTCAACCCTTTGGGGCAGGACAGAAATATTTTATTGGGTTTATCATTTTATTTTTGTTATTTCAACGCTTGTTGTGATTAAGTAATGGAAAAAGAAATGCACAAGCACGACTATTTCGTGGAATTTTTATATATAAGTCTGTTTGTGCACTGTTTCCCTGTCAAATACTTTCCCTTCCTTCTCTTAGTCTTCTCTGCCACCTCTGTGAGTTCTGTTTTGGAGAATCCAATTCCAAGCCTAACATTGAAGTGAAACTCTGTGAGGCAAGGCAAA


Gene Sequence:
>Vu_30946(-)
ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAACTCAGAAACTACATCCTTAAACAAGGTCATGGCTGTTGGAGTTCTGTTCCCATTAAGGCAGGTTGGTTTCTTTCTTCTTTCCTGGTTGTGACCTTTTGTGAATCATACCACAGTTAGCATATTCCTTTTATGTACTATACAAAGGGGCATTATTCCTTACTTTTAATACTGTTATATTATTAAATAAGAAAGGTCTTTCTTCCTTTATTTGAAAGTATGTCTACTACTTATTTGAGCAAAGATTATGTTATCAAATTGAAATGTTGGCATCTTTCACTTCAGTAAATTTCAGATGTCTTAGTAAGCTCTTCTTTGCCCTTTGTTTGGATTAATTCTAATAAATTTATCCAATCAATTCTGCTTATGAAAAGGATACATTGGTAGGGAAAAGTAATACTTGTGAATGAAGTGTATTTTTCAGACTAAGTTAAGCTAACTCTTCTTCATATGTCCTCAAATTACACTAAAACTCCAGTCTTTTAAAACTTTACACAAATTTTCTATTTTGAAAATATCACTAAGACTTCTTGACAAAAGAGACCACTGTAAAGATATAAAAAAGTTGATGACTTGGTAGTTACTAAAAATTAATAATCCTGCTTGCTAAAGTAATTTGATAATTCTGGCTTGCGTAATTTTAACATCTTATGGTAAGACTAAACGGGCATTTTGTGTAAAAGTATATTTGCTGACAAAGATCAAAAGTGTTTTAGTCAGACCAACATGCATTTATATAATATTTTCAATGTTTACCTGACATTGATGAAGAAAATACATTTATCTGAAGGCTTGCAAAGAAGTGGAAAGAGTTGCAGACTAAGATGGATAAACTATCTGAGACCAGGACTAAAGAGAGGGAAGTTCACCAAACAGGAAGAAGAGACAATCCTCACCCTTCACCACATGCTAGGCAACAAGTAAGCCACAAGAGTAAATCTTCTTTCACTTTATCAGTTTAAAAGTTTCAGTTTTATGACCAAGTTAACACAGAATAAGTAAACTCTGTAATTTTCAGTCAAAAATATTGAAGACATGTCAGGAGTAGGTGTTAAATCTTAATTGTGCATTAATTAGTATAAGAAGTTATGCAAAGTAAAGGAAAAGACAGAGTCCCTTAGTTCAATATTTGAGGCTGAAGCTATAAAATGCAATTAGAATTGGAAGGAGTTTAATATTTGATTCAGTTTTAGAAAAGCAACTAGGGCATTTAAAACGAAAAGTAAAAGGAAAAATTTGATAAGTAAGTCAAATCATGGATTGGCTTAGATGCCATGCTTCATTTTTTAAAGAGGGATGAACATTGAAAACAATAAAAAAAGTCTTTTCAACTATTCCTCAGTTCTGTTGTATATTAAATTTAAATCTAGTCCAATACCATTTGTCTAGTGTTTCAGAGTGTCCCTTCTTATATTCCAATCAGTAAGACAAACTATTCACATAAAGAATGTGTGTCTGTAAAACTCAGAACAGAAATTCAAACTACTGTTTAAACTCTTTGTCATAATTTCTCTCACATGTAGTGAAGATTGCTGAGAAAAACTGGAATTATATTATTGGGCAGGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGATAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGAGGCAAAAGCTAAGGAAATGGATTCTCATAACCAAATAAAGTATGCTAGCTCAAGCTCAGATACCATGGAGTCTTCAAACTCTCTCCAAAACCTTGCAACTCAAGGTACACAGAGTTGTAACTTCACCAAAGAGGCTAGCCAAAGCTCCTTGCCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAATTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTATTCAGGAGGCTGCAATCCATGATATGTCAGATATACCCTTTGGTGGAGGGTACCATAGATGCTTGGCTAACATTTCAGCCCCTGAGATTTTGAATTCAGAGCTGAAGTATGCAAATCAGATGGCGGAAAATGGTTTCATCCATTGTGTGCCTGGAGTTGACTTGATGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATGTACATATGA