Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_31023	LG8	43621117	43622316	PREDICTED: leucine-rich repeat extensin-like protein 6	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response to bacterium, cellular response to hormone stimulus, root morphogenesis, defense response to bacterium, root morphogenesis, cellular response to hormone stimulus, response to jasmonic acid, defense response to bacterium, plant epidermis development, response to jasmonic acid, cellular response to hormone stimulus, signal transduction
Cellular Component	is active in	cellular_component
Molecular Function	enables	structural constituent of cell wall

SNP	Position	Effect	Amino acid change
A/T	43621117	initiator_codon_variant	p.Met1?
A/G	43621368	synonymous_variant	p.Ala84Ala
G/C	43621372	missense_variant	p.Ala86Pro
C/T	43621373	missense_variant	p.Ala86Val
C/T	43621516	missense_variant	p.Pro134Ser
T/C	43621770	synonymous_variant	p.Phe218Phe
G/A	43621893	synonymous_variant	p.Leu259Leu
T/A	43621901	missense_variant	p.Val262Glu
A/T	43622068	missense_variant	p.Asn318Tyr
A/T	43622069	missense_variant	p.Asn318Ile
G/A	43622119	missense_variant	p.Asp335Asn
C/A	43622137	missense_variant	p.Pro341Thr
A/G	43622268	synonymous_variant	p.Pro384Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_31023.1

MASHSPKRKGLYLNAVSLLLLISFINPSHQAEHPFSPLPPLNPRLSKAYTALQAWKHKITSDPKNFTLNWCGPNVCNYTGIYCAPAPDDPHIYTVAGVDLNHASISGSLPEELGLLTDLALFHINSNRFCGSLPNSFDHLNLLHELDISNNQFSGPFPDVLLCISSLKYLDIRFNNFYGNIPSRLFDLKLDALFINNNNFKFSLPETFGNSPASVVVFANNDLNGCLPSSLAKMNATLNEIIITNSGLTGCLPSEIGDLDKVTVFDVSFNKLVGDLPQSLGKMKRLEQLNVAHNMLSGTIPESVCMLPRLENFTYSYNYFCSESPVCLKLKDKDDTKNCIPYRPLQRSPDECAAFYKYPVHCSAFGCVSPPPPPPPPPPPPPPPPPPPPPPPEKYHHYP*

CDS Sequence:
>Vu_31023.1

ATGGCCTCTCATTCTCCCAAGAGAAAAGGCCTTTATCTTAATGCAGTCTCCCTCCTCCTTCTCATCTCCTTCATCAACCCTTCACACCAAGCCGAACACCCTTTTTCACCTCTTCCCCCTCTAAATCCAAGGCTCTCCAAAGCCTACACAGCACTCCAAGCATGGAAACACAAAATCACATCAGACCCCAAAAACTTCACCTTAAACTGGTGTGGCCCCAATGTTTGCAACTACACTGGCATATACTGTGCACCTGCCCCAGATGACCCTCACATCTACACTGTTGCTGGGGTTGACCTAAACCATGCCTCCATATCTGGCTCGTTGCCAGAAGAACTTGGCCTCTTAACTGACCTAGCACTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCCCTCCCCAACAGCTTCGACCACCTAAATCTCCTCCATGAACTAGACATAAGCAACAACCAATTCTCAGGACCCTTCCCCGATGTTCTTCTCTGCATCTCCTCGTTAAAATACTTGGACATCAGATTCAATAACTTCTACGGCAACATTCCCTCGCGCCTCTTCGATCTCAAACTCGATGCCCTTTTCATCAACAACAACAACTTCAAATTCTCCCTGCCTGAGACCTTCGGCAACAGTCCTGCTTCTGTTGTTGTGTTTGCAAACAATGACCTCAATGGGTGTCTCCCTTCGAGTTTGGCCAAAATGAACGCTACCCTTAACGAGATTATCATCACCAACAGTGGCTTAACGGGCTGTTTGCCTAGTGAGATAGGGGATTTGGACAAAGTGACCGTGTTTGATGTGAGCTTCAACAAGCTTGTTGGAGATTTGCCCCAGTCCTTGGGGAAAATGAAGAGGTTGGAGCAGTTGAATGTGGCGCATAACATGCTTTCTGGCACCATTCCTGAGAGTGTGTGCATGTTGCCGAGGTTGGAGAATTTCACGTACTCGTACAACTACTTCTGCAGTGAGTCACCGGTGTGTCTCAAGTTGAAGGATAAGGATGATACCAAGAACTGCATTCCTTATAGGCCATTGCAAAGGTCACCCGATGAGTGTGCAGCTTTCTACAAATATCCTGTTCATTGCAGTGCCTTTGGTTGTGTATCTCCACCGCCGCCGCCACCACCACCACCTCCTCCTCCTCCACCACCACCTCCGCCGCCGCCTCCACCACCGGAAAAATACCACCACTATCCCTGA

Promoter Sequence:
>Vu_31023::LG8:43619117-43621117(+)

TGTTAATGTCATCTCCTTCTCTTCTTTCAAAATGGGGAAGGAAGTTGAATAGTGGGGAGTAGGGATGGCAACGGGTCGGGCACGGATAGTGCCTACCCGCAACCCGACCCGACAAAAAAAAATCCACCCGCTACCCGCACGGATACCCGCTTAAAAAATATCCGCGGATATTTTAAAACCCGCAGATACCCGTGGATATCCGCGGACCCGCAAATATTAAAAAAATATATATTTTAATAAATTATTAAAATAAAATTTAAATAGAATTACAAAAAGTATATAAAATATAATATAAATTAAATTAAATTTAAATTTAAATTCAATTTTAATTAAATTTAATCTTTTAAAATATAAATTAATGTTAATTTTAATTAAATTTAACTTAATAAAATATAAATTAAATTTTTATTTTATTTTTTGCGGGTAGCGGGTATTCGCGGGTACGGATAGTGTAATACCCGCACCCGACCCGTTTATAAGCGGGTATTAAAATATCCGCTACCCGCGGGTTGCGGATAGTAAATATCCGCGGGTATCAACTATCCGTCGCGGATTTTATCCGCGGATATCCGCGGGCGCGGATTTTTTTGCCATCCCTAGTGGGGAGGGAAGACGTATGAAGAGCTCCATTTTATGACAAGTACTTAAACAGCCTTTTACTGCAATGCCAATGATGCAGTAAAGCACTGATATGCAGACTCAAAAAGATGTAACCAGGGATGAAGTTGGGTGGAAGATGGAAGGAAGAGAGAGAAGGGGAGAAAAAGCGAGAAACACTTGAAAAAAAATCATGTTTCAGTCTACCGTTAGCCACGTCAGCACATTTTTAACGGTGTTAGTTTTCGAGGACTAAAACCAAAGTTTCGAAAAGAATGAGGACCAAATTGTACCTTATTTTGAAAGAGGGACGAAAACCAGAAACGGCCAATAGTTTAGGGACTAAAAACATATTTAACCCTAAAAAATAAACGAGAGTAATAAAGTTATTATATTCAGCAACTTATTTTAATAAGTTAATAATTAAATATTTTGGTAATAACTGAATTTAAGAACAGTTAAATTTACGTAACAAATTGTTTTCCATTTTGTGTAAAGTATTTTAGTATTTATGTAAACTATTTAAATTTTATTGTTACTATATCCCAAAAAAAAAGCTATATATACAGATAATAAAATTTATGAAGTATATATCATAAAACTATTGAGTAAAATAATGTCAATTTGAAATATATTCTTTGTTCATAACGAGACCTTATTTAGAAATATATGATTTAACCAAATTACAAGTTTGAACAAGTTTTGTTGCAAAATATTTTATAAATTTTAAAACTAAAAAACATGTTGGTGATATTATTGATAAATATTTTCCGATAGCATTAAAGAATTTTCGATTCTCTTTACTTTGCCCTTTTTAAACTTGTACTAAAATATTTACTGTTGGAATATTGGATATAATGTTCTAAAAGGCTTTGTTAATTATTGACAACGAAACCGGAGAAGTCTTTGATAATGATATTTAGCATACTAAAAAAATAAGCTGTATATTTTATAAATTATTTTTGAATTCCTTAAAGATTGTGAAAAGTCTTTTGAACCTAATTTAGGCATAATATGAGTGAGTAGAATATAAAGAAGAATATATAAGCACTAGGAAACGAACCTATAATAAAAAAAATGGGAAAAGAATGAAGCAAAAGTTAGGAGCAGAAAGAAGAAATTATCGAAAGCAAGAATGTGTATAATCCAACAAGTCACATTCGTCGTTATTCGAAAACAAAAGTCTATAATTATAAAAAGTTGTCCAAAGAATTTAGATGTAATGTAATAGTCCATGTAAATGCAGAACCAAACCTCCCAAGATTATTTTATTTCAATTTGCATCTCACCAAACTTGAGAAATTTTCGAAACACCTTGCGTATATAAATCCAAGGTCCCATGACACAAAATCACTGGTAAAGTAAACAAGCAAAAATAAAAGAAGGAAACTGAGCATCATTTA

Gene Sequence:

>Vu_31023(+)