Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31356 LG8 46805899 46809691 PREDICTED: uncharacterized protein ycf45
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   seed maturation, reversible differentiation, seed maturation, seed maturation, seed maturation, plastid organization
Cellular Component   located in   chloroplast intermembrane space, chloroplast intermembrane space, chloroplast, chloroplast envelope, chloroplast, chloroplast envelope, chloroplast, chloroplast, chloroplast envelope, chloroplast, chloroplast intermembrane space
SNP Position Effect Amino acid change
A/T 46806077 synonymous_variant p.Ile11Ile
G/A 46806497 downstream_gene_variant
T/A 46806499 downstream_gene_variant
T/A 46806705 missense_variant p.Asp183Glu
A/G 46806714 synonymous_variant p.Glu186Glu
A/C 46806878 downstream_gene_variant
C/T 46806897 downstream_gene_variant
T/A 46806900 downstream_gene_variant
C/T 46806901 downstream_gene_variant
T/A 46806906 downstream_gene_variant
C/T 46806912 downstream_gene_variant
A/G 46806918 downstream_gene_variant
A/T 46807010 downstream_gene_variant
G/A 46807011 downstream_gene_variant
T/G 46807549 intron_variant
T/A 46807551 intron_variant
T/A 46807717 intron_variant
A/G 46807941 intron_variant
A/G 46808086 missense_variant p.Lys404Arg
G/A 46808087 synonymous_variant p.Lys404Lys
A/C 46808129 missense_variant p.Glu418Asp
T/G 46808242 splice_donor_variant&intron_variant
A/T 46808243 splice_region_variant&intron_variant
C/T 46808546 intron_variant
T/A 46808553 intron_variant
A/G 46808556 intron_variant
C/A 46808562 intron_variant
A/T 46808717 stop_gained p.Lys556*
A/T 46808718 missense_variant p.Lys556Ile
A/T 46808722 synonymous_variant p.Arg557Arg
T/C 46809090 intron_variant
A/C 46809096 intron_variant
G/T 46809210 synonymous_variant p.Leu601Leu
G/A 46809213 synonymous_variant p.Val602Val
T/C 46809219 synonymous_variant p.Ser604Ser
A/T 46809252 missense_variant p.Glu615Asp
G/A 46809255 synonymous_variant p.Gln616Gln
C/A 46809259 missense_variant p.Pro618Thr
G/A 46809492 3_prime_UTR_variant
C/A 46809576 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31356.1
MRALNSHVLLIDLHYHPHVPTSALAYLRNSHFISPLRRRPTRLRCTASPEIRRPSSDRLYGSSPSTSRPEDLSLFLELLPLKMRRELYRHREIGGLIEVVMDLGRKPLARFPSGDWVISEQPIEHEDLRHAISKVGEFSDDNRSGIDRSLHRISAIRNRKMQIIGLTCRVGRAVSGSAGIIRDLVEDGGSILVIGPPGVGKTTLIRETARMLADEFRKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNLQHNVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIENIIKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFSCAVEMISKTECRVHHRLDATVDAILAGKPPLFEVRQWDDYAKDLENYAPVPEENLKETSGLTDNNITSSESETGKGDKDHARTWSTKWSTRGPVMKRSSPMQVYTHKILEADLLQVSKVMGLEDVIDVTDDIGTADAILATGSEIRQNPWIRGVAKFHHVPVFVIKSNTMAQMVKAVRMILGLESFGRTTNKSLNDCLDIEIEDDEPKRKPSLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIIALQLELVQSYQLAAEKSGTEQNPRLQILPLRINTNKPSKSTTSVARKKTTSASTDGSGNGTSITRLPILPE*


CDS Sequence:
>Vu_31356.1
ATGAGGGCGCTGAATTCGCACGTGCTCCTTATAGATCTCCACTACCACCCTCACGTGCCAACCTCTGCCCTCGCTTACCTCAGAAACTCCCACTTCATATCCCCTCTCCGTCGACGACCAACCCGTCTCCGATGTACGGCTTCGCCGGAGATTCGTCGCCCCTCCTCCGACCGCTTATACGGCTCCTCGCCCTCCACCTCCCGCCCGGAGGACCTCAGCCTCTTCCTCGAACTTCTCCCTCTGAAGATGCGAAGGGAGCTCTATCGCCACCGCGAAATTGGAGGCCTCATAGAGGTCGTCATGGATTTGGGGAGAAAACCTCTTGCCAGGTTTCCCTCCGGCGATTGGGTTATCTCCGAACAACCCATCGAGCACGAAGATTTGCGCCACGCCATTTCCAAGGTTGGTGAGTTTTCTGATGACAACCGGTCGGGTATTGATAGGTCGTTGCATCGGATAAGTGCCATTCGGAATCGGAAAATGCAAATCATTGGGCTTACTTGTCGGGTGGGTCGCGCTGTGAGTGGTAGTGCTGGAATCATACGTGATTTGGTTGAAGATGGAGGTTCTATCTTGGTGATTGGACCTCCTGGCGTCGGTAAAACAACTTTGATTAGAGAGACTGCTAGAATGCTGGCAGATGAGTTCAGGAAGCGTGTTGTAATAGTGGATACATCTAATGAAATTGGAGGGGATGGAGATGTTCCTCATGCAGGAATAGGCAGAGCCAGACGGATGCAAGTTCCAAATGTGAATCTTCAGCATAATGTTATGATTGAAGCAGTTGAAAATCACATGCCTGAAACCATTATAATTGATGAAATTGGAACGGAGCTTGAAGCATTGGCAGCCAGTACCATTGCTCAAAGAGGAGTTCAATTGGTTGGAACCGCACATGGAATGACCATTGAAAACATAATAAAAAATCCTTATTTACAGATTCTTGTTGGTGGCATAGAGAGCGTTACCCTTGGGGATGAGGAAGCCAGGAAGAGGAAAGTGCAGAAGACAATTCTTGAAAGGAAAGGACCCCCAACGTTTTCATGCGCTGTTGAGATGATATCTAAAACAGAATGCCGTGTTCATCATAGATTAGATGCAACTGTGGATGCCATTTTGGCAGGCAAACCTCCATTGTTTGAAGTCCGTCAATGGGATGATTATGCCAAGGATTTGGAAAACTATGCTCCAGTGCCTGAAGAAAATCTTAAGGAAACATCTGGTTTAACTGACAATAATATCACAAGTTCTGAAAGTGAAACTGGTAAGGGTGATAAAGACCATGCACGCACTTGGTCCACAAAATGGAGTACTCGTGGACCTGTGATGAAGAGAAGTTCACCAATGCAAGTTTATACTCATAAGATTCTTGAAGCTGATCTATTACAAGTATCAAAGGTAATGGGGCTTGAAGATGTAATAGATGTGACTGATGACATTGGAACTGCTGATGCAATTCTAGCGACCGGTTCTGAGATACGACAGAACCCATGGATCCGTGGCGTAGCAAAGTTCCATCATGTGCCAGTATTTGTTATCAAGTCCAATACCATGGCTCAAATGGTCAAGGCAGTACGAATGATCCTTGGGCTAGAATCCTTTGGCCGTACAACAAATAAGTCATTAAATGACTGCTTGGATATTGAAATTGAGGATGATGAGCCGAAACGAAAACCATCTCTGGAAGAGATTGATGCCTTGGAGGAGGTCCGACTTGCAATAGAGTACATTGTGATTCCTGGTGGAGAGGCTGTGGAACTTCTTCCTAGACGTTCTGAAATTATTGCCCTTCAGCTTGAACTGGTGCAAAGTTATCAGTTGGCTGCTGAAAAGTCAGGTACAGAACAGAACCCCAGGTTGCAGATTCTTCCCTTGAGGATAAATACCAATAAACCCTCCAAATCTACTACTTCTGTTGCCCGCAAGAAAACAACCTCAGCTTCTACTGATGGCAGCGGCAATGGCACCAGTATTACCAGGCTTCCCATTTTGCCTGAATAA


Promoter Sequence:
>Vu_31356::LG8:46803899-46805899(+)
TACAGGGATAACTTATATAATTTATTAAAGTATACCAAATTTTAGTTGATAAAAAGAATTTTATTAATAAAAAAAGATATACTTTAAGTATAGAAGTATTTTAATAATTTTTATTTTTAATTTAAAAAAAATAAAAAATTATTTAAATATTCTTAATTTTAAAGTTTAGAACGAAGATATTTTTGTTAATTAAAAGTTTAGTACTTTTTAAGAAGTTACATAAGTTAACAAACTTTGTGTATATATATATATATATATGTGGGTTTGTTGGCGCGTACGCCTGTTTTTCAGTTGGTACATTTTAGCAATGTGTATCGGGTTTTAGTAGACAAAAATATCCTTATATACCATGGATTCTAAGTTTTAAGGTTAAGGGTATTTTAATAATTTTCATTCTCAAAACTAAAAAAAAAAAGAAACCCTCAAACCCTTACTCACCTCTCTCATTTCTCTCAACTCTTTCTCTTTCATCTTTCTCACTCCAATATTTTCTCTGTAGCCCCAATTGAAAAGATCAGAAACACCCTACTGTAGCCCCAATTGAAAAAATCAGAAACACTTGCCGTTAAACAATCTTACAAAAAAATGATTTTATAATGAGTTTTGATCTTATAATTTTTGTCTTATCTAATTTTATCTAATTTTCACAAGCATAAAGAAATTGGTAATTGACCTGGAAAAAATCAGAAATACTTGAGTTTTTATTTTATAATTTTTGTCTCATCTAATTTTATCTCATTTTCACAAGCATAATGACATCAAAGGAATTGGTAATTGGCCTGGAAAAAATCAGAAACACTCGTCGCTAAATAATTTCTTACAAAAAATGACTTTATAATGAGTTTTCATTTTATAATTTTTGTCGTATATAATTTCATCTAATTTTCATAAGCATAATGACATCCGAAAGAATTGGTAATTGGCCTGGAGGGTTTTTTTAGAGATGATGATTCAACATATGCAGATGATGAAATTAGAGAAATTAGTGAAGATGGTGAAATTGATGAGATCTTGAATGAACCTTTGCCTGAAGGTGAATATGTCAATGACTCAACTCTTTACCAAGACAAATTGTTTAAAGGCAAGTGTTTCTGATTTTTTCAATTGGGGCTACAGTAGGAATGACAGAGAAAAGGTTGGAGTGAGAGAGATGAAAGAGAAAGGATTGAGAGGAATGAGAGAGGGTTTGGGGGTTTCTTTTTTTTTTTTTTTTAAGTTTTGAGAATGAAAATTATAAAAATACCCTTAACCTTAAAACTTAGAATCCATGATATATAAGGGTATTTTTGTTTACTAAAATCCGGTACACATTGCTAAAATGTACCAACTGAAAAACAGGCGTAAGCGCGTTAACAAACCCATATATATATATATATATATATATATATATATTTTGCTATAAGCTTAAAATATTTTTTTTTATATTAATACTGTATTAAGTTTTTAGTATATAAAAGATAAAGCTTGGGAACTGAGTTTTGGTGTATATGATTTGTTAATTTGTTGAGTGGAGGGAATCTCATTCCTTGCCCTAAGGAATATTAAATCTAAAGCAACCCTATCGTAATCGTAATCATGAGCACCCATACACCACCAACTTAATGATATTTATAGATTTTCAGCGTCGTCACATTATACTTAAAATTTAAGCACTAGATTATAATAATTTATGCGTATAGTAGTAAATTCAAGAACCCTTTGAGCATGATCAAATAAAACAAAAGACAAAGCATCTGATCATAAATAACAAACTAAATACAACAGTCAACCATTGGTACAACCTTCTACACATGAACACTGAACAAAATTATATGAAAACTTATTTTCTCTTAATGTTTTAGTTGAGATTTTTGTTGGTGATTATTGAGGAAGGCGAAAATAAGAAAAAGAAAAGTCCGTGGTTGGTTTGGTTGAAGGTGCGTGAAGGCAAACAATGCGTATAGTGCAATGTGTGGTGAGCAGCCTCTGACCAAAAACCGTTAACGTCTCTCAACACAACA


Gene Sequence:
>Vu_31356(+)
ACTGTGGAAAACAAAATCTCACAAACTCTACAATAAAAGAAGATACCATAGAATCTTCTCTTCTTTATTCTTCTTTCTCTCTTCTCATTCACCTTTCCCTCCATAATAACATAACCACTGCACATTCAACACAACACATAATAATAATGAGGGCGCTGAATTCGCACGTGCTCCTTATAGATCTCCACTACCACCCTCACGTGCCAACCTCTGCCCTCGCTTACCTCAGAAACTCCCACTTCATATCCCCTCTCCGTCGACGACCAACCCGTCTCCGATGTACGGCTTCGCCGGAGATTCGTCGCCCCTCCTCCGACCGCTTATACGGCTCCTCGCCCTCCACCTCCCGCCCGGAGGACCTCAGCCTCTTCCTCGAACTTCTCCCTCTGAAGATGCGAAGGGAGCTCTATCGCCACCGCGAAATTGGAGGCCTCATAGAGGTCGTCATGGATTTGGGGAGAAAACCTCTTGCCAGGTTTCCCTCCGGCGATTGGGTTATCTCCGAACAACCCATCGAGCACGAAGATTTGCGCCACGCCATTTCCAAGGTAATGTTTCCAACAAATAACGATTTGTTATTGTTTTTATGGTGTCAGTCGCTTGGCTTGGTCACATCACTTGGTTGTGATGACTGATGTGTAATTGCGATGGGTTGTTTAGGTTGGTGAGTTTTCTGATGACAACCGGTCGGGTATTGATAGGTCGTTGCATCGGATAAGTGCCATTCGGAATCGGAAAATGCAAATCATTGGGCTTACTTGTCGGGTGGGTCGCGCTGTGAGTGGTAGTGCTGGAATCATACGTGATTTGGTTGAAGATGGAGGTTCTATCTTGGTGATTGGACCTCCTGGCGTCGGTAAAACAACTTTGATTAGGTACACTTTTTATGTATCTTTACACATTAGCTAGTCTTGCTGAGTCTATTATTATTTAGGCTAATAAAGTTGGAATTTAATCAGAATGTATGTCACTGGTAAAGAAATACATTGCCATCTGGTCAATCATTGTTTGTACGATACATCATTCTTTCTATAAATATCTACTTTAAAAGTCACGCCTAAGATGGATTCAGTTTGGTAGAGTAATACATTTAAAGTGATTGACAAAAATTAGGATCTTACTAACAAGTAACTAGTTTTCCTTAACAAGTTAAGGATCTAAAATTAGAAAGTTATTTTTGTGCGCAGAGAGACTGCTAGAATGCTGGCAGATGAGTTCAGGAAGCGTGTTGTAATAGTGGATACATCTAATGAAATTGGAGGGGATGGAGATGTTCCTCATGCAGGAATAGGCAGAGCCAGACGGATGCAAGTTCCAAATGTGAATCTTCAGCATAATGTTTGTACAAATCTCATTCTTTTGTTGTACTTTACTGCATCTTATTTGGAAGACATCTAATCATTTACGATCGTCTGTGACACCGTTTATATGTATTTTATTCAGGTTATGATTGAAGCAGTTGAAAATCACATGCCTGAAACCATTATAATTGATGAAATTGGAACGGAGCTTGAAGCATTGGCAGCCAGTACCATTGCTCAAAGAGGAGTTCAATTGGTTGGAACCGCACATGGAATGACCATTGAAAACATAATAAAAAATCCTTATTTACAGATTCTTGTTGGTGGCATAGAGGTGCGAAGTTGCACTTTTCATTTTCTTTTCACTTTTATGATTTATATGAATAATGACTAATTAAATACATTCAACCTTTCTGGCCCGCTTCTTCTTTCAAAGAGCTAATTGATCTTAAAATTTCAGAGCCATGTGCAAATGGAATGTGTAGTGTTTTCCCACATTTCTAATATTTATTGAAGATTTGTTTGAATAGAGCGTTACCCTTGGGGATGAGGAAGCCAGGAAGAGGAAAGTGCAGAAGACAATTCTTGAAAGGAAAGGACCCCCAACGTTTTCATGCGCTGTTGAGATGATATCTAAAACAGAATGCCGTGTTCATCATAGATTAGATGCAACTGTGGATGCCATTTTGGCAGGTATTCCTCACCTTCTGTAATGAAGTATTTCAGTCATGATTAATTGACACAATATTTGAACAGTTGATTAAATTGAAGTGTAATTCGAAAATCTCTTTTATTACAGGCAAACCTCCATTGTTTGAAGTCCGTCAATGGGATGATTATGCCAAGGATTTGGAAAACTATGCTCCAGTGCCTGAAGAAAATCTTAAGGAAACATCTGGTTTAACTGACAATAATATCACAAGTTCTGAAAGTGAAACTGGTAAGGGTGATAAAGACCATGCACGCACTTGGTCCACAAAATGGAGTACTCGTGGACCTGTGATGAAGAGAAGTTCACCAATGCAAGTTTATACTCATAAGGTAAATTGTCTGAGGTTGCATGCGCTTGTTAAGGTCTTGAGTGATTGGGAACTTTATCACAATTTGAATGGGCAATGTCTTTCTCGTTGAATGAATTCAGATTCTTGAAGCTGATCTATTACAAGTATCAAAGGTAATGGGGCTTGAAGATGTAATAGATGTGACTGATGACATTGGAACTGCTGATGCAATTCTAGCGACCGGTTCTGAGATACGACAGAACCCATGGATCCGTGGCGTAGCAAAGTTCCATCATGTGCCAGTATTTGTTATCAAGGTGCCCACTTGCTGCTTCTTTAGTTTTTCCTTCAGTGTAAATCTCCTGTCTTGTAACGAACTTTTATTTCTTTCAGTCCAATACCATGGCTCAAATGGTCAAGGCAGTACGAATGATCCTTGGGCTAGAATCCTTTGGCCGTACAACAAATAAGTCATTAAATGACTGCTTGGATATTGAAATTGAGGATGATGAGCCGAAACGAAAACCATCTCTGGAAGAGATTGATGCCTTGGAGGTACACACCCTTCACAACTATTTAGTTAGTATCTGATTGCTCCACTTCATGTTCCATTTTCTGTTTTGCAATTAAAACATGTGCTGTCTATTGTAGTCTTGCAATTGCTTTCGAATCCTGGTTTCTGAAAGAAGATGCACTTAGCAATTGAATTAGTTTATTCAAATGGGAAATAGATCCCTTCCTGGGGACCATCTATGCTATTACTTGTTTCTCTATTGGTGTCTGGGTTCATTCTTAGAAGACCATTTCCCAATTACATTACATCCATTTAAACAAGAGAAAGCCTACAGTATTATATATTAACCTCTTTCATGTTGTCACTTTTTAAAATTCTTTTACTTTTTTTCTGGCAGGAGGTCCGACTTGCAATAGAGTACATTGTGATTCCTGGTGGAGAGGCTGTGGAACTTCTTCCTAGACGTTCTGAAATTATTGCCCTTCAGCTTGAACTGGTGCAAAGTTATCAGTTGGCTGCTGAAAAGTCAGGTACAGAACAGAACCCCAGGTTGCAGATTCTTCCCTTGAGGATAAATACCAATAAACCCTCCAAATCTACTACTTCTGTTGCCCGCAAGAAAACAACCTCAGCTTCTACTGATGGCAGCGGCAATGGCACCAGTATTACCAGGCTTCCCATTTTGCCTGAATAATTCAATTCTTTTTTCCCAATTCTAACATATTTCACTTCTGTGGTTCGTACATGTATTATGTATGTAACATGTACAGTATGAACGTGGGGTAAATAATTTATTCATAGCCTAAGAGCTTGTAGCTCAGTTGGGGTGTGATATCTATGCCGGAAGTTTGATCCTCCGTCCAGCTGTCTCTTCTTGTACCAAAGTGTATGTATTGAAAAAAAAAATCAATTCATATTAAATGTAATATAATACATCATGGTTTTACTCCTCCAATGTACTTTCAATTTATAGTGGT