Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34343 LG10 10508755 10512302 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phosphorylation of RNA polymerase II C-terminal domain, protein autophosphorylation, phosphorylation of RNA polymerase II C-terminal domain, protein phosphorylation, protein autophosphorylation, phosphorylation of RNA polymerase II C-terminal domain, protein autophosphorylation, positive regulation of transcription elongation from RNA polymerase II promoter, positive regulation of transcription elongation from RNA polymerase II promoter, phosphorylation of RNA polymerase II C-terminal domain, positive regulation of transcription elongation from RNA polymerase II promoter, protein phosphorylation, phosphorylation of RNA polymerase II C-terminal domain, positive regulation of transcription elongation from RNA polymerase II promoter, protein phosphorylation
Cellular Component   is active in   cyclin-dependent protein kinase holoenzyme complex, nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, ATP binding, cyclin-dependent protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity, ATP binding, RNA polymerase II CTD heptapeptide repeat kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
T/C 10508907 synonymous_variant p.Gly51Gly
G/A 10509050 missense_variant p.Arg99Lys
G/A 10509429 missense_variant p.Met195Ile
A/T 10509540 synonymous_variant p.Leu232Leu
C/G 10509542 missense_variant p.Ala233Gly
C/A 10509603 upstream_gene_variant
A/G 10509608 upstream_gene_variant
C/T 10509609 upstream_gene_variant
T/A 10509629 upstream_gene_variant
C/G 10509641 upstream_gene_variant
T/C 10509653 upstream_gene_variant
A/G 10509667 upstream_gene_variant
C/A 10509686 upstream_gene_variant
A/G 10509711 upstream_gene_variant
G/A 10509720 upstream_gene_variant
A/G 10509723 upstream_gene_variant
G/C 10509739 upstream_gene_variant
G/A 10509780 upstream_gene_variant
T/G 10509812 upstream_gene_variant
A/G 10509834 upstream_gene_variant
C/G 10509853 upstream_gene_variant
C/T 10509934 synonymous_variant p.Asp268Asp
T/A 10510099 synonymous_variant p.Gly323Gly
G/A 10510135 synonymous_variant p.Leu335Leu
C/T 10510212 upstream_gene_variant
T/G 10510326 upstream_gene_variant
T/C 10510332 upstream_gene_variant
G/T 10510429 upstream_gene_variant
G/A 10510448 upstream_gene_variant
G/C 10510487 upstream_gene_variant
G/C 10510492 upstream_gene_variant
A/C 10510640 missense_variant p.Thr385Pro
T/A 10510676 missense_variant p.Phe397Ile
G/T 10510800 upstream_gene_variant
G/A 10510894 upstream_gene_variant
T/C 10510930 upstream_gene_variant
T/A 10511174 upstream_gene_variant
A/G 10511224 upstream_gene_variant
C/T 10511225 upstream_gene_variant
G/A 10511297 upstream_gene_variant
G/A 10511298 upstream_gene_variant
A/G 10511427 missense_variant p.Arg482Gly
G/A 10511766 synonymous_variant p.Arg561Arg
T/G 10511897 upstream_gene_variant
G/T 10511997 upstream_gene_variant
A/T 10512047 upstream_gene_variant
C/T 10512194 synonymous_variant p.His599His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34343.1
MGCICSKENKDKVDEYEKEKEREKESNKSSVQLVAPSVSTAQSDSTRGTDGSVPLIVDTSTQAIRGSVVVTAEDKSNHSDATQGQQKRRVTVSCGVDDRMPMMSRILSVQHIAGEQVDSGWPIWLSSVAAEAIKGWVPRRADSFEKLGQVGQGAYSSVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATVHGLKLTESQIKCFLQQLLRGLQHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGEAIDLWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQHTYNRQISETFEKFSSPALALVDKLLTIEPEARGSATSALESEFFTTNPLPCEPSSLPKFSPSKEFDSKRRQKEATRKNQEAVRGRAPASVLRGAGDTKALGSPQYNAQGNISMLRKPNSIMCRQKYLCQENREAKENGEGGRVSVHGGFTHAATMTRGSVAGSSTLSKRVEPSLKNQRSHLNPATADLCTSALKKEPDSSAVESTMGYMPKKNRIHYSGPLMPPGGNLDDMLREHEKLMQDVFRSVKKANL*


CDS Sequence:
>Vu_34343.1
ATGGGGTGCATCTGCTCAAAAGAAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTACTAGAGGCACGGATGGTTCGGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCGTAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCAGAAGAGGCGCGTGACAGTGAGTTGTGGTGTAGATGACAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCCGGATGGCCGATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGATAAAATGTTTTCTGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAGTATATGATCCTGAAAAAAAGCAGCCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGTGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTGGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCACCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACACTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCTCCGGCATTGGCTCTTGTTGATAAGCTTCTGACAATAGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGAACCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGAGGAAACCAAACAGTATAATGTGCCGTCAAAAATATCTGTGCCAGGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGAGGCAGTGTAGCAGGATCATCCACATTGAGCAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGCCCTCAAAAAGGAACCAGACTCGTCTGCTGTTGAATCCACCATGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA


Promoter Sequence:
>Vu_34343::LG10:10506755-10508755(+)
TAAATATAATTAAATGAATGTATTTTATTGGTTAAGGAACTTTATTTGTCGTTCTTATCCTTTCTCAATTTTTTATGCACGTGCGAATCTTTTCAATATATGCATGAATACGATAAAAGTTATTAAGAAATAGATCATATAAATTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTACCAGCAGGTTATTTTCCTGTCAACAAATAAGTCACTAAAAAAACTGTTACATTTTTATAATCCAAACCTCAAAGAATTAGACAAACTTTTTTTCTTCAATATCGTTTCATCTATATTCATATTTATTTTTCAATTTCACTTTTTAAATAATATTTCTTTTAAATTTACTTTTTAATAATTATTTCTCTAAGTTTAACCACTTTTTCTTTTTACAATTTTTTTTTAAATTTAAACATATAAAATAAATAGAAATTATTTTATTTCTGTAATTATAACAATAATATTTATTATTTTTTACTATCCTAAAAACAAAATGTAAACACATGTCTTCCCTGATTCACAATAAAAAAAATAAAAGTCCACTAATTGACTTTATTTTTCACATTTATAATAAAAAGAAATATATATATATATATATATATACTATTAATATGAAGTTTTTTTCCTTTTTGTTTTAATCCATTCAAATAAAAATTTCACTTGAATCTAACGAAAACAATGTTACCATTATTATTGTATTAAAAAGGCGCAATAATAGCTTTTAAGACTATATATTTATTTTATTCTGGTTAAATTTGTTAAACTTTAAAATAATTATAATAACAAAAAATAATATTTTTTTATTATTAAAGTAAAATTAAATAATTTCTACAATTTCAATGTTTGTAATGTTTATTTTTTAGATAATTTTTTAAAATAATAATTGTTTTAATTAAAATAAATAAATTTAAGAAAAAAGAGTTAAATTAAAAAAAAATAACTTAAAATTTAAAATTGATAAAAAATATATTTTAATTTAAAAAATAAAATTGAAAACAAAATATGGAATATTATCAAGTAGTATAGACATGTTACGTTGAAATGAGCCTTATTAGATAAAAAACAGAAACAAAAATATATTTAAACCTTAGATGTTATGTTTTAACGTTAATTCGGTGTTAAAGTTGGTTTAACAATATGTTAAATTAATGGAAACATTCCAGCGACGTTGAATGTGGAATTCTGGGTGATTCGCATTTCTCGCACACAACCCGAAACTCTCTCGTCTCTGTTTTCATCCCTCCAACCATTTTCCTCATAAGCAATTAAACTCTTTTTTCTTTTTTTCAATTTTCCGTTAATGTCCTTTCCTCCCTTCAACCTCCAGCTTTTCCTCTGTACACAACATAACAACAATTAAAAACATTTTCTTTTTCTTTCCATTTCAACAAAGAACCAAGAAAATCATCGTGCATTGTTGTTGTTATTGTTGTTGTGCCCTGTTTCCATTGCAGCAATTTCTCCACATGGTTTTAGCCTTTTCACCATTCAAAGATCAAGGAATTTGAGCTCTTTTCCTTCATTCCTATTCATCTACCTCCTTTTCGATTCAATTGTCAACCCTCTGATTGGGGAATCCCTTCTTTGTTTGTTCTTCCGTGGTTATACATTTCCTGTTCATTTATTCATTTACAGCGCTTCATTTTCAAAATCTCAAGCCATTTGGCATTTGAGTTTTAAGATTCTACAATCTGGGAGAGGTGTAAAGCATTGAATTTTGAAATCCACAGCAGAATTTTTTATATTGGTTCTTTATGAATTCTTGTTACGTGGGATGTAAGTTGATAGACACATTGCAACATTGATTTTGTTGGTGGATTTTCCACTGGCATGATCGCCTTTGTAGTAGGGTGGGAGCTTCTGGGTTCCCAAGAAAATACAAGTGTACTACCCAGTTGCTTAACAAGTTTCACAAAAAGGTAGTGATTTGTTGATTGATTGGAGAAACAAAGCAACACCCCTTTTGTAAGAATA


Gene Sequence:
>Vu_34343(+)
ATGGGGTGCATCTGCTCAAAAGAAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTACTAGAGGCACGGATGGTTCGGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCGTAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCAGAAGAGGCGCGTGACAGTGAGTTGTGGTGTAGATGACAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCCGGATGGCCGATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTAGTTTCAAAATATCACTTCTTCATGCCACCCTTTTTCTTTATAAATGTTTCAACTAGTTTACATGCAAGTGAATGCTGTGTGTGCAGGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGGTACATGCCCTGCATGTTAAGACTTACAAGTACTTTTAAATAGCTACTATTCTTTAACAAATTTCTAAGGAGTTAATGATGATTACCTCGAGTGGATTCTGGTCACAGGCAGCTTTTCTTTCATTTTTAAACCAACAAGAGTTGAGATGCATTCTGTTGAAAGTATAAATTGAAGTTACATTGTGGTTAAGGAAAAGAAGAGTGGATGGCTATTAAGTTGTTTGGAAAAATGAATTGTAGTTTTTTAGCTGTACGTTATTCAATTATTTTCTTGTTCGCTTTGCAGATAAAATGTTTTCTGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAGTATATGATCCTGAAAAAAAGCAGCCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGTGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTGGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTTGGTTTCATGAACCAATGTTCATAATTAGCACTTGTACTGAAATGGTGTCGTTTTTCTAAAAATTCTGACTACTTCTGTCATTTGATTTAACATTTTCTGACTACGTGGTGTGGTGTGGTGTGGTGTGTGCCATTCTTCCTAATTTTACTCATTTTAAGCCTGTGTTTTAGTTTATATGTTCAAGCCAAATCCAAGCGTAAAAACTGTACAGATGTCACTTTCAAAATAAGCACATTGAAGTAGAAGGTTCCTAACCAAGTAAACGGAAGAGCATAATAAGCATGGAATTTCTATTACTACTAAGCACAGACAAAGAGTTGCAATTTAACTTTGAGAGTGATTTAATTTATGCAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCACCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACACTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCTCCGGCATTGGCTCTTGTTGATAAGCTTCTGACAATAGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGGTAATGCTGTGAAGCCTTTTATTCTTATTTTTCAGACATACTTTACATGGAAATTAATCCTGTTTTTATGCTGTTATATAAGCACTTTTAGTGCTTTATTAAATGAAAACATCTGACAGCTATTAAAAGTTTTGAATTTTACTCAAGAGCCCCAACTGACTTTTTCCCCCCTTACATTCTTTAAGGCTTTTCTGACTGTAGTTTTTCAAAGTGATGATGCTCTATTTACTACCACTGTTTTGGATATCCTACTTATCATATTATATTCATGTTACATATTTGCTAGTTCTTCACTACAAACCCCTTACCTTGTGAACCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGTATTAAAAGTTTTATTTCTCTACAAAGTAACATAACCATATAATAACAGTGACCAAACTCTGATGGAGATACATGTTATAGTGGAAGCCAAGACTGTGTTAAAACATTTGCATCCCATTAAAGATTACATTGAACGTTGTGTTGGTACCGTTTAATGCTGCGATAAAAAGTGCCATATTCATAGAACTTCACCTTTATTTTCAATCAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGGTATGTTTATGCTTCTAAACATATATTTCCATGGAGATTGATTATTATTGACAACTTTATTCGATTTGACGGGGTCATGAATACTTCAACATTGGCAGAGGAAACCAAACAGTATAATGTGCCGTCAAAAATATCTGTGCCAGGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGAGGCAGTGTAGCAGGATCATCCACATTGAGCAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGCCCTCAAAAAGGAACCAGACTCGTCTGCTGTTGAATCCACCATGGTAAACAACAATCTAACTTCTCTTTATTACCACCTTATTTCTGGTTTGCAACCTTGTCAGTAGTCACAGAACCTACCATACAACCTTAAGATTTAAGGTTGGAGAGTATTGTGAATGTTAAAAATGTTAAAAACAAAGTTAGGAGAGAAGATCACACAAAAAGTAGTAAGTCAACTTTTCTACGGAGACTGATCATAAGTAAAGGTTGCGAATATTTCATACCCAATGTTATTAAAAGAAAGTAAAACTGAGATACATATAATAGGAACATAACATAACAGTTTTTTTATATACCTGTTGTGGTGTGATTTCAGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA