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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34376 LG10 10753641 10754867 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 10754479 missense_variant p.Thr224Ser
G/A 10754724 synonymous_variant p.Leu305Leu
A/G 10754725 missense_variant p.Ile306Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34376.1
MESEKSWEQKALVSELIQGLQIAIKLKENFNIPSSIHARDSLLQSILSSYDKALLILKQNAPFSNSETMHQPTQTSSPQFPPKDHYEGALKDHQELKQNSKKRKKMPKWTEQVRVKIQNGVEEPLQDYYSWRKYGQKNILNAKYPRSYYRCTFQKSKGCFATKQVQRSEEDPNVFDISYRGSHVCSQGNDAVLSLKLADTEEKSQGCDSDVHHAQSSRERVTNYTNTLTVETDNMTPHPFPSFGCMPQDNPHTFLPSFVLENDAFCSTVSQTSFFSPNTPESNYLVSPSFHLHDELDRVFDKPCPDSDAAGSVLADASTINSPNFDFNFSLDAVGIGANCPSMPGGFHPKCT*


CDS Sequence:
>Vu_34376.1
ATGGAAAGTGAAAAGAGTTGGGAGCAGAAAGCTCTCGTGAGTGAGCTAATTCAGGGGTTGCAGATAGCAATAAAGTTGAAGGAAAACTTCAATATACCCTCTTCGATTCACGCTAGGGACTCACTACTGCAGAGTATATTGTCTTCTTACGACAAGGCTTTGCTTATTCTGAAACAAAATGCACCATTTTCAAATTCAGAAACCATGCATCAACCAACTCAAACTTCCTCACCACAGTTTCCTCCCAAAGATCACTACGAAGGTGCCCTCAAGGATCATCAAGAACTTAAACAAAATTCAAAGAAAAGAAAGAAGATGCCCAAATGGACGGAACAGGTTAGAGTGAAGATCCAGAATGGGGTTGAAGAACCTCTGCAAGATTATTACAGCTGGAGAAAATATGGACAGAAAAACATCCTCAATGCAAAATATCCCAGAAGCTACTACAGGTGCACATTCCAAAAATCTAAGGGCTGCTTCGCCACCAAGCAAGTGCAGAGATCAGAAGAAGACCCCAATGTCTTTGACATAAGTTACCGAGGAAGCCACGTCTGTTCTCAGGGAAACGATGCCGTTCTGTCATTAAAGTTAGCAGACACAGAAGAGAAATCGCAAGGTTGTGACAGTGACGTTCATCATGCACAGTCATCGCGAGAAAGAGTTACAAACTACACAAACACGTTGACTGTGGAAACGGATAACATGACGCCACATCCATTCCCTTCGTTTGGATGCATGCCACAAGATAACCCCCACACGTTTCTTCCTTCCTTCGTACTGGAGAATGATGCCTTTTGCAGCACCGTTTCCCAAACATCCTTCTTCTCTCCGAACACACCTGAATCAAATTATCTTGTGTCTCCGTCTTTCCATTTACATGATGAACTCGACAGGGTCTTTGACAAGCCGTGCCCTGATTCTGATGCTGCCGGGAGCGTTTTAGCTGATGCATCAACCATCAATTCTCCAAATTTTGACTTCAATTTCTCACTCGATGCAGTGGGAATTGGTGCAAATTGCCCTTCAATGCCTGGGGGTTTTCATCCTAAGTGCACTTGA


Promoter Sequence:
>Vu_34376::LG10:10751641-10753641(+)
ATGAGATTTCGATAACAATAGATAAAAAATGAAGTATGTAAGAATTTTATCACCATCAAACTAGAATAAAGTACATGATTTAAAACAAATACGAAGATGAATACAACAAGATGCACATCAAGGATGTTTACCTTACCTTAAGAAAAGAATTACAAGTTGAATAAAATATTTGACTATAAATGGGATTGGGAAAACCAAAATAAACACTCAGATTAGACAAATCAGAGATTGAAATTAGTGTGGAAAGTTGACAAAAGTATTAAAGGAAAATTGCACTAAAGAGACAATGTTTCAAAGTTTGTCTTCAAAAGAAAAAAACATTAATGTCCATGAATAGATTGGTCAACATGGAATTCTTAAATTCAAAAACATGTGAAGTAAAAGGAATCACAAGAGAAGAATTTGGATGGCTTAGCAAGATAGCAAATATCAGAAATCTTGTTTTCTGTAAATGGTTGATGTGTCATCCACAAAAGAATTAACTTGGTTTGCTTTTTGGATGGTTACATTGAACTTTGTCTTGTTTGTGTCTGGTAATTTTCACATGGCTAAAATTTGTCCAATGCTTTCAAAAAGCAACTCACATGTTTACAAATCTTATACGCACTAACTATTTTCATCAAATCATAATTACATCTCACTGTGCATACAAAAATCCATTTATGATCTCTTATTTTGTTTGGTTTGAGTTTCATTAATATAGGTAAAAAAAGCGATTAGAGGCAGCAAATCCTATCTCTTCTTATGATCTCTTATTTTGTTTGGTTTGAGTTTCATTAATATGGTTGAAACTTCAATAAATTTTTCTCTTAAAAAATTTATCAATAATATCAGAATTGATGATTAGTTTTAGTAACAATTCCAAACGAGTAGTGAAAATTATTACTAATAAATATACTTTACTCCTCAATTCTCTTTGTTGTAATTTTCTATCATTTTAACATGTTTTTTTTTAGTATTTTCAGTTTTTTCTATTAATTATTCCGTAACAATATAATTTTTTATAACTTATAGTATTTCCTACATAATTATCTAAACTTAAAACAAATAATAGACCAATAAGGAATATAATGTATTCTTCTAGAAGTGAAAGGGATAAAAAATGAAATAAAAGTATTTTTTTAGTCAAAACTTGCGCGGAGTATAAAGTGCATGCACATAGGCGTCTTTATCGTTTCAATATTAATTCTCTTTTTCACACTATAATTCTTAATCCTTCCACAAGTTCTACAGCAAAAGGATGTGAATTTATTCCGTTTCTTTCCTTTTTCATTTGGTCACTATCAGATTGAATTAATGTTTGGGTATAGGTAAGGATCAGGTCGTATCAATAGTATTTATTAGTTATTCAATCTGAAATAAAAAAAATTATTTATTATTCATTTTATTAATAGTAGGTTATCTTTTAAAAAATATTTATGAGTATTTATAAAAAATAAATTATAAATTCAATTTAATAAAATACAAATTTAATTTAATTTTTAATCAAGACAAATTAAGTTTTAATTTTTTTTAAATAATTGATATATATATATATATATATATATATATATATTATATAACTTATTTTTAAATAAGTGTTAAAATATTTATTATTAAATAAATATTCACATGTATTAATTATTTACCTTAAATTTTTCTCATCCCTTATATGTATCCTCAAAGAATCTTCTATCCGAAAACATTTTAAACAAATGGTAAATTAGGAACCAATGGTTTATCATCATAATCAGAAACTTATTATGACGTGTACTGGACTTGGTCAGCATTCTATTGTTCACTAACAAAATATCTCGACTAAAACTCATTTTCTCAGTCAAACTTTGACTGATTTTCATACATTACTTACATTTGACAATTAAATAGCACCCATTCCTTTGCTTCATCATTCACCATAAACCCTCCTCTCACTAAGCTTTTGCCATTTCAATTCTCTGTCCCAACAAATCAGTTTAAAGTTCAAAACTTAGTTGCCATTTCAATAGTTAGATAGAGTAAAA


Gene Sequence:
>Vu_34376(+)
ATGGAAAGTGAAAAGAGTTGGGAGCAGAAAGCTCTCGTGAGTGAGCTAATTCAGGGGTTGCAGATAGCAATAAAGTTGAAGGAAAACTTCAATATACCCTCTTCGATTCACGCTAGGGACTCACTACTGCAGAGTATATTGTCTTCTTACGACAAGGCTTTGCTTATTCTGAAACAAAATGCACCATTTTCAAATTCAGAAACCATGCATCAACCAACTCAAACTTCCTCACCACAGTTTCCTCCCAAAGATCACTACGAAGGTGCCCTCAAGGATCATCAAGAACTTAAACAAAATTCAAAGAAAAGGTACAGATTTTAGCAGCACAAGACAATCCCTTCTAACGTAGGTTTGTTATTTCTATTTGTTCTAACACTGGTGGGAATTTCGCTGCAGAAAGAAGATGCCCAAATGGACGGAACAGGTTAGAGTGAAGATCCAGAATGGGGTTGAAGAACCTCTGCAAGATTATTACAGCTGGAGAAAATATGGACAGAAAAACATCCTCAATGCAAAATATCCCAGGTGAAATTTTTTTAAATTTGTCTCTAAGAAATTCATTGGTCACTGATCAAACAATTAACAACGGATTGTTACATTTGCAGAAGCTACTACAGGTGCACATTCCAAAAATCTAAGGGCTGCTTCGCCACCAAGCAAGTGCAGAGATCAGAAGAAGACCCCAATGTCTTTGACATAAGTTACCGAGGAAGCCACGTCTGTTCTCAGGGAAACGATGCCGTTCTGTCATTAAAGTTAGCAGACACAGAAGAGAAATCGCAAGGTTGTGACAGTGACGTTCATCATGCACAGTCATCGCGAGAAAGAGTTACAAACTACACAAACACGTTGACTGTGGAAACGGATAACATGACGCCACATCCATTCCCTTCGTTTGGATGCATGCCACAAGATAACCCCCACACGTTTCTTCCTTCCTTCGTACTGGAGAATGATGCCTTTTGCAGCACCGTTTCCCAAACATCCTTCTTCTCTCCGAACACACCTGAATCAAATTATCTTGTGTCTCCGTCTTTCCATTTACATGATGAACTCGACAGGGTCTTTGACAAGCCGTGCCCTGATTCTGATGCTGCCGGGAGCGTTTTAGCTGATGCATCAACCATCAATTCTCCAAATTTTGACTTCAATTTCTCACTCGATGCAGTGGGAATTGGTGCAAATTGCCCTTCAATGCCTGGGGGTTTTCATCCTAAGTGCACTTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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