Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34571 LG10 12307890 12309105 PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 6-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   response to reactive oxygen species, response to reactive oxygen species, ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cell division, ethylene-activated signaling pathway, response to nematode, response to nematode, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, response to high light intensity, phloem or xylem histogenesis, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, intracellular anatomical structure
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 12307976 3_prime_UTR_variant
C/T 12308022 synonymous_variant p.Ala295Ala
A/G 12308127 synonymous_variant p.Ile260Ile
C/G 12308147 missense_variant p.Asp254His
A/G 12308340 synonymous_variant p.Arg189Arg
C/T 12308367 synonymous_variant p.Ala180Ala
G/A 12308446 missense_variant p.Ala154Val
T/C 12308514 synonymous_variant p.Arg131Arg
G/T 12308516 synonymous_variant p.Arg131Arg
C/T 12308602 missense_variant p.Arg102His
G/T 12308682 missense_variant p.Asp75Glu
C/T 12308748 synonymous_variant p.Ser53Ser
G/A 12308754 synonymous_variant p.Ser51Ser
G/A 12308891 missense_variant p.Pro6Ser
C/A 12308907 5_prime_UTR_variant
C/G 12308946 5_prime_UTR_variant
C/A 12309020 5_prime_UTR_variant
A/G 12309022 5_prime_UTR_premature_start_codon_gain_variant
G/A 12309024 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34571.1
MANPNPLQLSALNQIKLHLLGELSPLPITPSSDLTKNNFSFLFEEPNPTSSQSSSLCSQSSTSQSSATMDQFFSDFFDFPTTSTEHQFSRFEIESKPQIIDRQTPNPHPQTSTSDFTFPNTHDRKKPQSNRKKSLQISLPQKTEWIQFGEGEVAGKVVQQAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRFRGSKAILNFPLEAGADNRKRQREEEEPVVEVVKREKVEDFDVTCIRDAPLTPSSWPGFWGSDANGIFAVPPLSPLSPHPALGYPQLMVV*


CDS Sequence:
>Vu_34571.1
ATGGCAAACCCAAACCCTCTTCAACTTTCTGCTCTCAATCAAATAAAACTGCATCTTCTCGGAGAACTCTCTCCTCTTCCGATCACACCCTCTTCTGATCTCACCAAAAATAACTTCTCTTTTCTATTTGAGGAACCAAATCCCACCTCATCCCAATCGAGCTCCCTCTGTTCCCAATCTTCAACTTCTCAATCATCTGCAACAATGGACCAATTTTTCTCTGACTTTTTCGACTTCCCAACTACTTCCACGGAACACCAGTTCTCTCGTTTCGAAATCGAGTCCAAACCCCAAATAATCGATCGCCAGACTCCGAATCCACACCCTCAAACATCAACCTCGGATTTCACGTTTCCGAACACACATGACCGCAAGAAACCTCAATCAAATCGAAAAAAGTCGCTGCAAATCTCTCTCCCGCAAAAGACGGAGTGGATCCAGTTCGGAGAGGGTGAGGTTGCGGGAAAGGTGGTGCAGCAGGCTGCAGAAGAGAAAAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAGCGTGGCTCCAGGGTGTGGCTGGGGACGTTCGAAACGGCTCTGGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAGGTTTCGCGGCTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAACCGAAAACGCCAAAGGGAAGAGGAAGAGCCGGTGGTGGAAGTCGTTAAGAGGGAAAAGGTAGAAGATTTCGACGTCACCTGTATTAGGGATGCTCCCTTAACGCCGTCTAGCTGGCCAGGCTTCTGGGGTTCCGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGCTATCTCCTCATCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGA


Promoter Sequence:
>Vu_34571::LG10:12309105-12311105(-)
TTGCTCTAAGACTAAAAAGACCTTCTTGTGAGAAAAAGATCACTTGCTTAAGAATTGAGGTTCCATAACTTACATCTGACTTTAGCATCAGAGTATCTTCGCAGGTACCCCCACTTCCATTGAGGCGGACGCAATACATCAGTGAAAGGAGTGTAAACAATTTCCAGGAGGATGAACATGCAATATCATTGGAGGAAGAGCAAGCATCCCTGACGTTCAACAGTAGTAAAGCATCATCAACAAGATTCGTATCTCGGTCCCAAATAATCATACTAAAACAATAATTAATTAAGTTTATTGTCCTAATTATAAGTTGGTTGAAATAATTTTGTTCTAGTTAATTATATTATTTAAGTTATTATTCATTTCAGAAATTGAAACTTTTTTTATGAATGTATCTTTAAAAGTATTTTGGATAATTAACAAATATATATATTTAAATTATTTTTATCTTGATTATTAAAGAATGTAAAATTATTAGATTTATCAAATTAAAACTTCAATTAAAAGTTATGAGGTTTTTATAAAGGTGCTAATGTTTCAAGTTTCTTAAAATAGCATTGTTTAAATCATTCATGGCATTTAAAATATTTTCTCCTTAAATCTCTTTCTTATCTTCATCTTTGATATTTTCAACTTAAAATTTACGTGCAAACATAATAGTAAGCAAGTTTTAGAAAATGAAATCAATATGTAATTGAATAGAGAGATTAATCTCTTGATGGGTTATATAACTGCATATTAGGCTTGCTTGATGCAAATCTACACAAAAATGATTTATGTGCTGTCCCAAAATATGGAGGGAAAATTCGTTTTAATTTAGATAACTTAAACTATAATATTTAAGAGAAAAAATATACTTTCTTGAAAACTAGATATGAAAAAAAAATCATACAAACTTGTATTATATACAGTCCAAGTGAACTAGAATTAACATATTAATATTCACATTAAATAATCATTTGAGTGAACATTAAGGATGACTGAACGATTTTAAACACTTAAAAATTTTAAGTATCCCCCATAATCAAAGTTATAAATAAACTATAAATAGGAATATAAAGTAAAGAGATATATGATTATACTGTAAACTTAAACTTAAACTTTTATTGTACTAGCCAAACAGTTTGGATAGTTTGGATATTAACTTGATCGTGGAGTACATTTGACAGAGATATAACCTTACATGGCTTGAAGATGAAGTGTTAAAAACTTAATAAAAATGTATAGGTGAAATTGAAAACGACCTTAAGAAAGTTAATGAAAAATTTGAAAAAGTATTTTGATTGTATTTTCTAACCCCACGCCCAAACCAAAACTCAATTAATTTAGTTTGAATAATCTTTAAGGATTTTCAAACATATAAATTAATACGATTCAGTTGTTAGTAAACAGCTCATATGCTTAACACAAACGAAGATAGCTTTTAGGCCTTCTAGAATTAAGCACTTTATACTAATGACAAATATACAGATAAATTTTGCTTGCCTTCCTTTAACCTTGCCAACACTCATGCTTTTATGTCTTTTGGAATGCACGATTATAGACAAAACAAAAACAACCCGAATCGGTTAACATTATTTTAAAACTATACTAAACGAAGGAGTAAAACATATCAGTAGAAATAATTATGTTCTATTAACAATGCAAGTTATCTCATTTAGTAATTTTTTTTTTTTTAAAACTGAATTCAACGGACAGACAAAGAGGGCCCTCTGACAAGTGACAGCAGAAGCAAAGAATGGGTATAATGATCCTCAAAAGTCAAAGAATATGCAGTTGACTAGGGCAAGGTTGAGACAGGATTAGGTTTGAACCAAACTGGGTCGGGTAATTAGGGAACGGAGTCAAGTTTTTGGGTCATGTATAAGCGGAGTGCTAGTGTCAAGAAAAGCCTGTCGGGTCGAGTTCTGGAGCAAATCCAAGTATCCGACCCAATTTAGAAAATGGATGCAGATAGAGAGAGATGATTAAAATAATTGAGAAGGTAAGTTAGTGGA


Gene Sequence:
>Vu_34571(-)
AGGTTCGTGCAACAATCATTGCAGGCTCCTCCTTTGAAACTTAATCATCTTCAATGGCTATATATCTTAATTTTCCACTGTCTTTGATACACTCAAAATCTTCCTTCAGCTTCTTGAACATCTCAAGCACGCTCCTTCTCCATCTTCATCTTCTTCCTCGTAAGAAACCATTTCTAAATCAGTATCAGAAACCTCACTGATGGCAAACCCAAACCCTCTTCAACTTTCTGCTCTCAATCAAATAAAACTGCATCTTCTCGGAGAACTCTCTCCTCTTCCGATCACACCCTCTTCTGATCTCACCAAAAATAACTTCTCTTTTCTATTTGAGGAACCAAATCCCACCTCATCCCAATCGAGCTCCCTCTGTTCCCAATCTTCAACTTCTCAATCATCTGCAACAATGGACCAATTTTTCTCTGACTTTTTCGACTTCCCAACTACTTCCACGGAACACCAGTTCTCTCGTTTCGAAATCGAGTCCAAACCCCAAATAATCGATCGCCAGACTCCGAATCCACACCCTCAAACATCAACCTCGGATTTCACGTTTCCGAACACACATGACCGCAAGAAACCTCAATCAAATCGAAAAAAGTCGCTGCAAATCTCTCTCCCGCAAAAGACGGAGTGGATCCAGTTCGGAGAGGGTGAGGTTGCGGGAAAGGTGGTGCAGCAGGCTGCAGAAGAGAAAAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAGCGTGGCTCCAGGGTGTGGCTGGGGACGTTCGAAACGGCTCTGGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAGGTTTCGCGGCTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAACCGAAAACGCCAAAGGGAAGAGGAAGAGCCGGTGGTGGAAGTCGTTAAGAGGGAAAAGGTAGAAGATTTCGACGTCACCTGTATTAGGGATGCTCCCTTAACGCCGTCTAGCTGGCCAGGCTTCTGGGGTTCCGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGCTATCTCCTCATCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGAAATTGAAATCACCTTTTTTTATTCGTTTTTCCTTCTCGAAAATCGAGATCATTTGTTTATTCGTTTGTTTAAATTGAATCATTGTTTGTGCCTCTTCATTCT