Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36258 LG11 20110064 20113348 PREDICTED: LOB domain-containing protein 19
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   tissue development, positive regulation of transcription, DNA-templated, cellular response to hormone stimulus, cellular response to hormone stimulus, plant organ senescence, cellular response to hormone stimulus, plant organ senescence, hormone-mediated signaling pathway, hormone-mediated signaling pathway, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
SNP Position Effect Amino acid change
G/A 20110209 missense_variant p.Pro165Leu
G/T 20110218 missense_variant p.Pro162His
C/A 20110459 downstream_gene_variant
T/C 20110462 downstream_gene_variant
T/A 20110608 intron_variant
C/T 20110714 intron_variant
C/T 20110718 intron_variant
T/G 20110742 intron_variant
G/A 20111259 intron_variant
C/A 20111308 intron_variant
A/G 20111593 intron_variant
C/A 20111714 intron_variant
A/T 20111719 intron_variant
A/G 20111766 intron_variant
A/T 20111930 intron_variant
C/G 20111946 intron_variant
A/T 20111958 intron_variant
T/G 20111959 intron_variant
A/T 20112116 intron_variant
T/A 20112118 intron_variant
T/C 20112125 intron_variant
C/T 20112624 intron_variant
G/C 20112625 intron_variant
T/C 20112649 intron_variant
A/T 20112665 intron_variant
A/G 20112685 intron_variant
A/T 20112709 intron_variant
C/T 20112853 intron_variant
T/A 20112946 intron_variant
C/T 20112947 intron_variant
T/A 20113000 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36258.1
MDYGGKIGGSERGGPCGACKFLRRKCVKSCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRMPMAVAPLPHPQSSSPQTLPSSDHLASNAEMQSVPIMQYDPLQPHSASLELSSILFNQSDQQLEDRELQTLAREFVTKYLPGVRFQQSNSP*


CDS Sequence:
>Vu_36258.1
ATGGATTATGGAGGAAAGATTGGTGGAAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGAGTTGCATTTTTGCACCATACTTTGACTCAGACCAAGGAACTGCACATTTTGCTGCAGTTCACAAGGTGTTTGGTGCAAGCAATGCCTCTAAGTTACTCATGAGAATCCCTGCACACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTTATGAACTTGCAGGCTGAGTTGACCTATGTTCAAGCCCGTTTGGCCACAATGCAGCGCATGCCAATGGCAGTGGCTCCTCTTCCACACCCTCAAAGTTCATCACCACAAACTCTTCCTTCCTCAGATCATTTGGCATCAAATGCTGAAATGCAGAGTGTCCCTATTATGCAGTATGATCCTCTTCAACCACATTCAGCATCATTAGAGTTAAGCAGCATCCTTTTCAACCAATCAGATCAACAACTGGAGGATAGGGAACTCCAAACTTTGGCTCGAGAATTTGTCACCAAATACTTGCCCGGAGTAAGATTCCAGCAATCTAACTCTCCCTAA


Promoter Sequence:
>Vu_36258::LG11:20113348-20115348(-)
AAACATGTATTATATTAAAAGCGTCACACATGAGTAAGTATTGGAAAAGGGTGAAAGACAGCACACTGGCGATGTGTAGAGGGAAAACAATCTCGTACTAGACAGAAAAACGAGGGCAGGAAGGAGGAGCCCTGTACGAGGTGAAAGAAAGTGTAACTTTTTTAGAAGAAGCAGAGGGCACCAATAGTAACTCACACATTTTCATGGTGTCACTTTCACAAGAGAAACAGCAAATTAAGTGAAATGGAAGCAGAGGTGACAACTGAGAGAGAATAAGAGGGTCTACAAATGTAGCATTAAATACAGATACATAGAAAAAGAGATTGAATTGAATGAGATGAGACAGATAAGATAGGATGTTTGTCCCACGTGCTGCCGTAGGAAGCTGGTATGGCACGTGGCTTCTTTTAGTGGCGGTTGGAACCTGATACTGATGCTGTCTGTCACCTACTGAATTCAACTCTCTTCTTCTTCACTCTTCTCACCATTTTTGTGTTGTGTTTTGCACTGTGTTTGCTTCACGCAAGACCTCTTCTTCCCTTTCTTTCTCTACTACCATACTACTTTGTTCCCTCCCTTCTTAACTTTCCTTGCTTTCCTTGCTTGCGTGGCTTTAAAGTTTCAATCTTTCGACCAAATTCAGACCCCCACTACACACATCGCTCTCGTAATAACCTTAACAAAATGCTTCTCATCAACCTCAGAGACCATTCCTGCTACCCACATTCATATAATATTTCAAAAACAAAGACTTTTATCGTGTCAGGGAAGAACAGAAAAAGTGTAAAAGAAATTACCTTTTAAATGTTTGTGTGCATTTCATAAAAATGTACAAAAGTAAAAGATTATCTTTTTTGAATTAATTCTTTTTTCACAAAGCTTCAGTATATTCTTTCCGTTTCTTTTATATTATCCTTTAATGAAATTGGAGTTTTATTATGTATTTTATAATTTAACTTTCTATTATGAGTGGAACTTAAACTTTAAATTAAAAGAGATATTAGTAACATATATTTTCAAACACTTTTCTTTTATTTAAAGATTACAAGCATTCTTTATTAGAAAGTTAATTATGTTCGAGCTAAAGTAGTGCCATGAAATTCTTTTTCTGAATGTTTAGTGTATCATAGGAAACAACCACGCTTCTAGTTCATTTACACATATATATTCAAGTGTTCTAGCACTTCTTTATAATTAAATAAATTTGGCTAATGGCTTCAAAATTTCTTAATTTTGTTAAATTTTAACAAATAAAAAATATAGGTTAATTATGTTTGCACTTCATAGATTTTATGCAAAATTAGAATTTATTTCTGTTCACTAATTTTAATACATTTTGATCTATTAAAAGTGAAACGATATTTTTAGTTAATATTTAAGAAGAAACCTACCAAAGCAATATAAATAATTTAAATACAACTAAAATATTGTTTGGTATATTAAAAAAATATAACAGTTATTACTAGAAGGATTGTATTTATTACTTTTTAAAAATTAAACTACTTCATACATTAATTTCAATTTTTAACAAATATTTGAAAATTTTTAAAAATAAAATAGTATTATCGGAATGTTTTCTTCAAGACTCTTCAGGGAAGAGTAATATTATAAAATACTTAAGAAATTCCGTCTTCCATTGATATACACCTTTCTCCCATTTCATTAATTATAAAGTAACGTGTGATAGTTCTCACAGAAATTTGATAGGATTACTGAAATCAAAGTCTTTGCTAGAAGCCAAATTGAAACTGAAGCACCAAGCTAGTCCATTTCAAGTGAGTGACCCACCACCAAAAGCATTCACTCATTATTCTCTCGACATCAAATCAAAATCAACTTAGCAAGTAACATACAAACCCCTCATCACCTCATCATCATCATCATATATATATATATATCTCTTTCTTGTGCCCCACAAAAATTTTTGGTTCAACCCTTTGCAAGGAAAAGATTAGGCCAATTTCTTGCTTCTTATTACCCTTTAGAGAGAGAGAGAAGGA


Gene Sequence:
>Vu_36258(-)
ATGGATTATGGAGGAAAGATTGGTGGAAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGAGTTGCATTTTTGCACCATACTTTGACTCAGACCAAGGAACTGCACATTTTGCTGCAGTTCACAAGGTGTTTGGTGCAAGCAATGCCTCTAAGTTACTCATGAGAATCCCTGCACACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTTCATATCATCTCACTCACTTCATTTCTCCCTTTCATTTCTCTCATTCAGTATACTCATCTCTTTATTCCTTCCTTTCCTTCTTCTTGCTCATCACAGAACTTTTTAAATGTAACAAAAGTAAGAGTCAAATCCAGCAAGGGTTTAAACTTTTATGTGTCTTTCTTTCTGGTTTGGTTTTCTGCAATTCTTGGTAAAACCAGATAATGCATTTTTGTCAGCTACTTAACCTTAAAAAATAATCTCTTCTCTTTAAGAAATAGTAAAAGGAAATGGTAAAATTCAGATAACGGTGTCTCAAACAAGATTACACAACATTACACATGTGAAGAACTTTAAAACACCAGAAGATGGAAAGCTTAGAAAATGGTTGTATAAAATGAATGACTGCAAACTAATACTATATCTCATCACTCACTTCGTCTTCTTACTTTTCCTTTTGTTTGTGAACCATGAATCAGTGATGCAACCGAATGTGTTGGAATAAGTACTTATGCTTGTTCTTGAATCCTTATTCATTGCACACTTTGTTTTAGATCAATCATTCACCACTACAATAGGCTTGATTATTGTAGTTTTTAACAGGGATTAATATTAATATTTTAACAGATAAACTGGCAGTGATCATGCTAACATGCGCCTGGGTGTGAACTGGTCCCATGCTTGTACTTTGCAGTGTAGTCTCTTGACAAGCATCACTGTTCTGTATTCCTCGTAGGTCAAGATCTTACCATTTAGGATATTATTATAGTTTGTACATTGTACTGTTTGCTTTGACACGTTTGTTAGCTTTTGGACTATTTTTCCATGGAAGCCATACACTACTTAATTAGGACGCCCCCTATGAGTGTAGGTAGGTTTTGTGATTTCAAGGTAGCCATAGATATATCCATAATCAGGTATACTATACCATTATCACTAGCTACTACTAATCAATACTTAAATACCATGTTATTACTATGGTAGAAATAATGAACAAAACCTACCCAAAAGGTCAACATTTAGCATAAAAACTTGGGCACCTGAAATCCATGTGCTGTTGAAAATTAGGTTCTCAATGAACAAAACTTTGTGAAATTCATGGTAATTATTAATATTAGTATAGTGTTTTTTATTTTTTTTACAAAGAGAGAGGGGTGGTGGTGGTAGCCGTCAACTGGGTGTAGCTGACTATGGAGGCTTGTTTTTGTTGCTTGCCGGAGCCACCAAGCAACAAAATTAGCAGCTCGAGAAATATTCTAATATTTTCTGTCTTGACTTTCAAACTTTGCTACATATATACACATTTGTATATTAGCAAATGGTGATTAATGTTCACAATGCATTTAAGTGATGTGATTAAAAATAATGAAAATGTTTCTTCACGTGAATATATTGCAGAAGTTCCTTAATATTATTATTTTGTGAGGAAATTTCAGTTTAATGCAGTATTGTTTAACTATGAATAGTGTCTGATTTTGTACTTGAAATTTGGTGGTGTTAATAAATTTTATAATGTAATGATCACTGAATTGCAGGACATTGTCTAGTGTATAAAAGTCTTAAAAATTCACACGCTTGTATTCATTGTATATTATATTCAGCACGCTAATCAACTCAGTTATACCATAAACTGAACTATTATAGTCCAAACAATGAGTTGTTTTATCTACAGTTTTCTACAGTATATTTTTAATCTCCAATTTGAGAAATTTTGATTTGTATGAAACTTTGCAATTGAAACTAAGATGTAAAGTGGTAGATTTATTTATTAAAATACTTACCATAAGATGTAGCGCAGAAAGACCCTACCAGATTTGAAAAGTCTTATGTTATACTAAGGTTATTGTTTATTATTGATGATCTTAGTAGATAAAGTTGCATAGTCTTATGCGTGATATAATAGCAACAACCATTTTCCTTATATTGGAGAATGCATCAAGTATTATCTAAATTCTATGATGCAATAATTGACTTGTAGAATCTCTCTACATGTTCATCCATGATACCTGTGATTAACAACAGCAAAAAAATAGAAAGATAACATCTGCACGTAGTACACTATATATATATATATATATATATGTTTCTGTTCCAATTTTGTGGTCATTATTGGGCAGAAATACACCAATTGCTTCCTCAACTTTAATTAGGTAGAATTCCATTTTCTCTGTGATTAGTTACCAAATAACAATTAAGTAATCCCCCTTCTAGATTCTGCAGAGAGAAAGGAAAAGCAGTTCTGGATAAGATTGATCTTGTCTTTTGCTGCAATTAAACAAGCATTCAAAATAAAATACTGAAGCTTAAGTTTATCTTTTAACACTGAATGAGAATATTCTTCACATGCATGCATAATTTGGAGTATGATAAATTGTATTAAATTGCCGACACATGATTGAGGTAAGTGGCCATAATCTTTATCTCTTTCTCTCTGACATTCTACTATTGTCTGTTCAATGATATGGTTAAAGTACTTTTTGATCAGTTGATGATATCTTAATCAGACAAATTGTGCTATTACTATGGCTACAGAATTATTAAGTTATCATATTTAATCAAAACCTCCTTACATGATATATGAATAGTTGCAATTGAAATGCAACTGATGTGTACTGTAGTTGTTTAACAACAATGATTAACTAGATGTTGATTTAAATTGTGCAGGTTATGAACTTGCAGGCTGAGTTGACCTATGTTCAAGCCCGTTTGGCCACAATGCAGCGCATGCCAATGGCAGTGGCTCCTCTTCCACACCCTCAAAGTTCATCACCACAAACTCTTCCTTCCTCAGATCATTTGGCATCAAATGCTGAAATGCAGAGTGTCCCTATTATGCAGTATGATCCTCTTCAACCACATTCAGCATCATTAGAGTTAAGCAGCATCCTTTTCAACCAATCAGATCAACAACTGGAGGATAGGGAACTCCAAACTTTGGCTCGAGAATTTGTCACCAAATACTTGCCCGGAGTAAGATTCCAGCAATCTAACTCTCCCTAA