Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36327 LG11 21708981 21711238 PREDICTED: dof zinc finger protein DOF5.3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of glucosinolate biosynthetic process, regulation of transcription, DNA-templated, regulation of glucosinolate biosynthetic process, regulation of glucosinolate biosynthetic process, response to jasmonic acid, response to wounding, regulation of transcription, DNA-templated, root radial pattern formation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to insect, regulation of root development, regionalization, root radial pattern formation, regulation of glucosinolate biosynthetic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to insect, response to jasmonic acid, regulation of glucosinolate biosynthetic process, response to insect, response to insect, regulation of transcription, DNA-templated, response to wounding, regulation of glucosinolate biosynthetic process, regulation of glucosinolate biosynthetic process, regulation of glucosinolate biosynthetic process, response to jasmonic acid, regulation of glucosinolate biosynthetic process, regulation of glucosinolate biosynthetic process, regulation of root development, response to jasmonic acid
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 21709044 intron_variant
G/T 21709053 intron_variant
T/A 21709122 intron_variant
G/C 21709136 intron_variant
C/T 21709166 intron_variant
G/T 21709182 intron_variant
A/G 21709190 intron_variant
G/A 21709194 intron_variant
A/G 21709198 intron_variant
C/T 21709200 intron_variant
T/C 21709304 intron_variant
T/A 21709315 intron_variant
A/C 21709366 intron_variant
A/T 21709419 splice_region_variant&intron_variant
C/T 21709490 synonymous_variant p.Pro35Pro
T/C,* 21709510 missense_variant p.Val42Ala
C/A 21709511 synonymous_variant p.Val42Val
C/T 21709513 missense_variant p.Ala43Val
G/A 21709521 missense_variant p.Gly46Arg
T/C 21709534 missense_variant p.Val50Ala
T/C 21709540 missense_variant p.Phe52Ser
G/A 21709570 missense_variant p.Gly62Glu
A/C 21709577 synonymous_variant p.Thr64Thr
C/T 21709585 missense_variant p.Ser67Leu
C/T,* 21709599 stop_gained p.Gln72*
G/A 21709603 stop_gained p.Trp73*
C/T 21709605 stop_gained p.Gln74*
A/G 21709613 synonymous_variant p.Gln76Gln
C/T 21709617 stop_gained p.Gln78*
C/G,* 21709655 synonymous_variant p.Leu90Leu
T/C,* 21709659 stop_lost p.Ter92Argext*?
G/A,* 21709660 stop_retained_variant p.Ter92Ter
A/G,* 21709661 stop_lost p.Ter92Trpext*?
G/A 21709671 missense_variant p.Gly96Arg
G/T 21709678 missense_variant p.Gly98Val
A/T 21709679 synonymous_variant p.Gly98Gly
C/T 21709681 missense_variant p.Ala99Val
G/A 21709682 synonymous_variant p.Ala99Ala
T/G 21709689 stop_lost p.Ter102Gluext*?
A/T 21709690 stop_lost p.Ter102Leuext*?
T/C 21709692 missense_variant p.Trp103Arg
G/A 21709693 stop_gained p.Trp103*
T/C 21709750 missense_variant p.Met122Thr
G/A 21709759 missense_variant p.Arg125Gln
G/T 21709772 synonymous_variant p.Gly129Gly
G/A 21709789 missense_variant p.Arg135Lys
A/G 21709796 synonymous_variant p.Gln137Gln
A/T 21709824 missense_variant p.Met147Leu
G/A 21709833 missense_variant p.Gly150Arg
G/A 21709834 missense_variant p.Gly150Glu
C/T 21709859 synonymous_variant p.Ser158Ser
G/A 21709863 missense_variant p.Glu160Lys
G/A,* 21709872 missense_variant p.Gly163Arg
G/T 21709880 synonymous_variant p.Thr165Thr
C/T 21709883 synonymous_variant p.Asn166Asn
G/A 21709885 missense_variant p.Gly167Glu
A/T 21709903 missense_variant p.Gln173Leu
G/A 21709918 missense_variant p.Arg178Gln
G/A 21709921 missense_variant p.Arg179Gln
G/A 21709922 synonymous_variant p.Arg179Arg
C/G 21709926 missense_variant p.Arg181Gly
G/C 21709927 missense_variant p.Arg181Pro
C/T 21709928 synonymous_variant p.Arg181Arg
G/A 21709935 missense_variant p.Gly184Arg
C/T 21709942 missense_variant p.Ala186Val
A/G 21709947 missense_variant p.Thr188Ala
G/A 21709961 synonymous_variant p.Gln192Gln
G/A 21709964 synonymous_variant p.Gln193Gln
A/G 21709976 synonymous_variant p.Ala197Ala
C/T 21709979 synonymous_variant p.Ser198Ser
G/A 21709987 stop_gained p.Trp201*
C/T 21709993 missense_variant p.Ala203Val
G/A 21710012 synonymous_variant p.Ser209Ser
A/C 21710017 missense_variant p.Glu211Ala
G/C 21710031 missense_variant p.Glu216Gln
T/C 21710052 stop_lost p.Ter223Glnext*?
G/A 21710054 stop_retained_variant p.Ter223Ter
A/C 21710105 intron_variant
A/G 21710106 intron_variant
T/A 21710108 intron_variant
C/A 21710124 intron_variant
G/A 21710129 intron_variant
C/T 21710130 intron_variant
C/T 21710136 intron_variant
C/T 21710138 intron_variant
C/T 21710154 intron_variant
G/T 21710156 intron_variant
C/G 21710165 intron_variant
G/C,T 21710172 intron_variant
A/T 21710191 intron_variant
G/A 21710196 intron_variant
T/A 21710197 intron_variant
T/G 21710216 intron_variant
A/G 21710217 intron_variant
G/A 21710225 intron_variant
C/T 21710241 intron_variant
C/T 21710258 intron_variant
C/T 21710308 intron_variant
C/T 21710310 intron_variant
A/G 21710334 intron_variant
T/A 21710335 intron_variant
A/C 21710383 intron_variant
T/A 21710416 intron_variant
A/G 21710454 intron_variant
A/T 21710455 intron_variant
G/C 21710527 intron_variant
T/G 21710577 intron_variant
A/C 21710579 intron_variant
A/C 21710606 intron_variant
C/A 21710658 intron_variant
C/T 21710838 intron_variant
G/A 21710846 intron_variant
G/C 21710932 intron_variant
G/C 21710964 intron_variant
G/A,* 21711158 intron_variant
G/T 21711203 splice_region_variant&intron_variant
G/C 21711206 splice_acceptor_variant&intron_variant
G/A 21711210 splice_region_variant&synonymous_variant p.Gln228Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36327.1
MIMYFKVVVIQNWCPRCDSSNTKFCYCNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTTSTKMKAVASESGSRVNLERIWSGSVVDLDEAGDDRELDDEAVVDHATTRQQRGGRGGEGATAGRREQWLDGSGREEFLGWQQREERVDERELDDEAVVDHATATQQRGGRDGEGAAAGRRKQWLDGSRESFFDGSREKRSTDYTLVERRAVSYYDVSFPL*


CDS Sequence:
>Vu_36327.1
ATGATAATGTACTTTAAAGTTGTTGTTATACAGAATTGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTGCAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAGACGTGTCGCCGCTACTGGACCAAAGGTGGTGCTCTTCGCAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTGGCAAAGACAACCTCAACCAAGATGAAAGCCGTTGCATCTGAGAGTGGATCTCGAGTGAATCTGGAGCGGATCTGGAGCGGATCTGTAGTGGATCTGGACGAAGCTGGTGACGACAGGGAGCTCGACGACGAGGCAGTGGTTGACCATGCGACGACGAGGCAGCAACGGGGAGGCCGCGGCGGTGAGGGAGCAACAGCGGGGAGGCGCGAGCAGTGGTTGGATGGCAGCGGGAGAGAAGAATTTCTTGGATGGCAGCAGAGAGAAGAGCGGGTAGACGAACGGGAGCTCGACGACGAGGCAGTGGTTGACCACGCGACGGCGACGCAGCAACGGGGAGGCCGCGACGGTGAGGGAGCAGCAGCGGGGAGGCGCAAGCAGTGGTTGGATGGCAGTCGCGAGAGTTTCTTCGATGGAAGCAGAGAGAAGAGAAGCACAGATTATACGCTTGTAGAGAGAAGAGCAGTCAGTTATTATGATGTCAGCTTTCCTCTCTAA


Promoter Sequence:
>Vu_36327::LG11:21706981-21708981(+)
TGAGTGTAACCTTTGGCCACTAGACGAACTTTGAGGTGATCAATAGTTCCATCAGGACCAATTTTGATAGCAAAAACCCACTTGCAACCAACAACAGATTTCTCATACAGTAATATGACAAGGTCCCAAGTTCCACTACTTTGAAGAGCACTTAGTTCATCTAGAAAGGCCTAACGTCAACTAGGATGGGCTAAGGCATCGGTAACAGATTTTGGGATGGTCACAGAATAAATAAACGAAAGGAAGGTATAAAAAGACGAAGACAATTTATGATAACTTAAATCAAGATAATGTGGAGAGGGATTACGGGTAGAACGTATACCTTTTCGAATGACAGTTGGAAGGGTAGACTTAGTTGTCGGAGCCGGAGGAGACAAGGTAGTTGGCACTTCAATTGAGTCACTTGGTGGTTGTTGAGAAACACCTAGTGAACTAGGCACAATTGGAGGAGCACAAATAACAAGAATATTGATAGTATCAGAAGGAGACATATCAGAAGAAGAATGATCATTAAAATAAAAGGAAGACTCGTTGAAAGAAGAATGATCATTAAAAAATGACACTTTTTATACCGGTTAGACACCTATAAAAGTGAGATTTTTTATACCTGGTATGATAACAACAGGTGTATAAGTGATATTTTTTATACTTGTTCTAAAAGTAACCGGTATAAAAGTGAAACTTTTATACCAGTTTTAAAACTAGTGTAAAAAAATGAAAACTTTTTTTATATCCTCTGCTTCTATATCTCTTTGAAAATTGGTATAAAAAGCTCTTTTTAACAGGATAAAAAGTCTTTTTTAGTATAATGTACATGGTTATGTATGGGCTGTGACCAGTCAAACTTTTTGGTAGTCAGCTCACTCATAAGTGTTCCCACAATAAACTTGTTAGTTATGTCTGATTGTGAGTACTCCTTGATCATTTTCATGAATTCCTTTGCATTTTCCATTTTTGGTATAGAAGGTTTTACATTCTCTGCCATAAACATGCGCATCAAGTCTAGTGATAGCCTTTTAGACCTATGCCAAGCCTCATAAAGAGACTTCTCATCACTTGTACTGGTCTCTGTAATGACTGCGGGCATTTCATCCATCATAATAGCCATATGCAAGTCTAACACACCCAGTTGGAATTGAATTTGTTCTGACCAATCAGAATAATTTAACCTATTAAACTTGACCACATTGTTGCTCAAACCTAATAAACTCATGGAAACTGAAAATAATATACAAGCTCATACATTAATGTTTTGATAAATTTAATGGATTCAAACAGAATAACCACACTAGTCATGCATTTAAGTTTACCTTTGGATGACACTTAAACTGATAGATAATCATATAAGTCATTCATTTAAGTTCACTTTTGGGTGATTCTTAAACTGAAAAATTTCATACAATTAAGAAACTAAAATGAATATACTTTAATAAACAATCAATCATACTTAAGTATATTTGTATGCTATCTTTGGATATACAAACATATTTACTAAGTATATGAAATGTCTCACTTTAACGTCATCAATTATAAACAATAGTTCATTTTTGAGTAATCCATAATAGTTTCAGTTGGGATTGTTAAAACGTTTGGTGAAAATTTGGTGAAAATTAGGTGAAAACAAGGTGAAAATTAGGTGAATATTTAATATAGATTCAGACGGGTATTACATTATTTCCAGATTATTACTATATTTTTTAGATATATTTTCGTATTGATATAATCTTATTGAGTGTTTAACCATCAATAGAAAATAAAGCTGTGACGAATTTAAATATTTAATTTTATATACCAACAAGTTATCTATACTATATTTTCTAGCGAAGATTAATGTGATATAGATTATCAAACATAGATTAACCGTATATATAAATTAAACGGTGAAATCTATAGGGATCAAAATAATATATACAATAAATATAAAGCGTTAATGCTGATGTAAGAGTCAGTTTTTGTTTTTTTTTTCTATTTTTTTTGTTATTATTCTAAGTTGAGTTACA


Gene Sequence:
>Vu_36327(+)
ATGATAATGTACTTTAAAGTTGTTGTTATACAGAATTGGTATTGCACTGAAAAAAGAAAAAAATTTGTTAAAGACTCACTAGTACAGTAAGAGGTTATGGCACCGGTTATTTTAGCTTATAGACACCGGTTATTGACTCGATGCAAAACAATATAGGATTAGAAATCGGTTCAAAGGAACCGAGGCAGTATCCTCTTCCTAGTTTCCCCATCAGGCCACCGTCGTCTCGTCTTTCTCACGCTGTCAAACACCACACGTCGTTAAACACCACACGCCACCAAACACCACCGTCTTTCTCACAGACCACCCACCGCCAAACACCATCATCTCCCTCTTCTCTTCCTTCTTCCTCAACTAATAATGTTACCCTCACATCCACCACCACAACAACTACTCCTACCACCACCACCACTACTCCCACATCGGAAAATCAAAACCACAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTGCAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAGACGTGTCGCCGCTACTGGACCAAAGGTGGTGCTCTTCGCAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTGGCAAAGACAACCTCAACCAAGATGAAAGCCGTTGCATCTGAGAGTGGATCTCGAGTGAATCTGGAGCGGATCTGGAGCGGATCTGTAGTGGATCTGGACGAAGCTGGTGACGACAGGGAGCTCGACGACGAGGCAGTGGTTGACCATGCGACGACGAGGCAGCAACGGGGAGGCCGCGGCGGTGAGGGAGCAACAGCGGGGAGGCGCGAGCAGTGGTTGGATGGCAGCGGGAGAGAAGAATTTCTTGGATGGCAGCAGAGAGAAGAGCGGGTAGACGAACGGGAGCTCGACGACGAGGCAGTGGTTGACCACGCGACGGCGACGCAGCAACGGGGAGGCCGCGACGGTGAGGGAGCAGCAGCGGGGAGGCGCAAGCAGTGGTTGGATGGCAGTCGCGAGAGTTTCTTCGATGGAAGCAGAGAGAAGAGAAGCACAGATTATACGCTTGTAGAGAGAAGAGCAGGTAAGTACGGTAAATTGACTCGGTTGTTTCTTTAACCGAAGTAATTTACTTTTACTGCCTCGGCTCTTCCTCCAACCGGTGCCTATACGGAGATTATACGCTTCGGGCAGTTTTTAACCGATTTAATATGTTTATTATGCCTCGGTTCCTATTGAATCGAGGCCTATAAGTTCGCACAAATTACAATTCTACCACCGCATTTATATATGCTTCGGGTCTGTCCAAACCGAGACCTATTAGGCGCGTTAGAAAGCCTTTTTTTTACTAATGACTTTGTTAAGGACCACAAAACCAATGTCAATGTAACTCAGTCTAAAGGTGAAAAAAAACGTAAGAAACTAGTATGCTATGTTTTTTTTTTTTAATTAAATCAACAAATTAAAAAATAAATGATTCCCTAATTAGTGGCAAGAACATCAATAAAATTAGTTGTAAAAAACTAATTACTTTAAACTTTAATGAAACTTATTGTTATATGCTGACTTTTATTTATATATAATATAAACAAAATTACATGACGTGCATAAAATGCCAATATAAGTGAAATTATGCTATATCATTCTCATAGGATACTGAATCCTATTGTGATACCTATTGGCCATGTTTCTAAAATGACCCAATATAGACATCAACACCCAGAGAGTACTCATGCACACATCATAACTTAATATTAACACATTCAATCTAAATGAAATCCAACACCATTAAGTTAATTAAAACTTTAATCTAATATATTATCTAGCACAACAGCACTTAAAACTCTTATCAATTCGTTCCCCGGTTTTTAACCTTTGAAAACCCTCTCCCAAAAGTCCAATGCATTACATACTTAGACATATTTTACCATAACCATTCTGCACTAACAGACCAAACCACATGTATTTTAATAAATCCAATGAACCAAATTTATTACCTCATACCAGATTCTTGACATAAACCTAAACAATATAAACTATCATATATCAAATCACTTTATTGTGTTCACCATTTAAGATACTTAAATCCAGCTTTTTCCCAACATCATACTCAATATAATAGCATTAATAAACAGATGCCAAAAATTAAATAACAAGTAATAGTCCACCCACGTTGGTTTTTTAGAATGATTAGATGTGTGTTACTTTCACCCTTCTTCTGCAGTCAGTTATTATGATGTCAGCTTTCCTCTCTAA