Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36759 LG11 28824489 28825088 Protein CCA1 isoform A
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, long-day photoperiodism, flowering, regulation of gene expression, negative regulation of transcription, DNA-templated, long-day photoperiodism, flowering, regulation of protein-containing complex assembly, long-day photoperiodism, flowering, long-day photoperiodism, flowering, negative regulation of transcription, DNA-templated, circadian rhythm, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, negative regulation of circadian rhythm, circadian rhythm, negative regulation of transcription, DNA-templated, response to cold, response to organonitrogen compound, long-day photoperiodism, flowering, response to cold, circadian rhythm, positive regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, circadian rhythm, regulation of protein-containing complex assembly
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity, protein domain specific binding, sequence-specific DNA binding, protein binding, DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding
Pathway   B 09159 Environmental adaptation   C 04712 Circadian rhythm - plant [PATH:ko04712]
No SNPs found.

Sequence Details:

Protein Sequence:
>Vu_36759.1
MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKVNGYLLTFLYQSHRLLSNRIELLNEEIHNKIDTRTSLELGLI*


CDS Sequence:
>Vu_36759.1
ATGGACGCGTACTCCTCTGGAGAAGAAGTAGTTGTAAAGACGAGAAAACCGTATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAGCTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAGAAGTTTTTCACAAAGGTCAATGGATACCTTCTCACTTTTCTTTATCAATCACATCGCTTACTCTCCAATCGAATAGAACTCCTAAATGAAGAAATTCATAACAAAATTGACACTAGAACATCTCTAGAGCTTGGATTGATTTAA


Promoter Sequence:
>Vu_36759::LG11:28822489-28824489(+)
TTGTTAGAGAAAAAAGTTTCTATTATCACTAAAAAAATGAAATAATCTTAAATTATATTTATGATTAATCAATTTCATTCATATTACAAGATCTCTTTAACAAAAAATTTAATGACTTTAAACTTCTTCTTATATAAAAATTAAGTTATTGAGTAAAGATTTATGAATTTTTTAGGTTATCTAATTATTTCATACAAAAAAATTCACACAATTGATTTTAATATTTTATAAAATAACTAACTAAAAAAGTTACTTATTAAAAAAATTAGGATTCACCAAAATTTCAATTTTTTTTTCATCAAATGAGTCAAATTAACTCAAGTTCTAAACCATTTAATAACATTAATAAAATATATAAAACATTATTTGAGATGATAAGGATAATTAACACCACATAGAGGTTTTGCCCAAATTGGAAAACAAAAATACTGCAAGAACGGTACAAGTTCAGGTTCGCACTTGATCACAGTGCACGAGTCCACCACAGGCACGGGGAACTTCCCCCAATAAAACGCCACGTGCCGGTCACTAGAAAGTGAGGTGCCACGCTGGCCGAATATACCACCACTAGGCGAAGTGGCCCAAGCGTCGTGCAACTGGGTGACCGGATGCGAGCGGTCGACCTGGCCACGTCACCCCAGGCCCCACCATCACAAGCTGGCGACGCTTTTACGGACCTAAAACCTCAGCCATGAAGTTTGTGGATGAGATTCGAGCGAGGAAAAATATTAAAAGCTGCACCCCGATAAAATAAATAGAGAAAGAAAGTGAAAAAAATTAGGAAAAGTGCAAAGGTAAGCATCAGCACCAAGAGCCAGTAGTTTGGCGCCACTTGTCGCTTTCCCATAAGCCGACTCTTCTCAGTCTCAAAAAAATAAGGAGTCGTTAATTTTCGGAAGAAAATAATAAATCCACACAAAATTATAGTGGCTGAGATTGCTCCTGGCGCTTAAACACTTTCGGGGTGAGTGAGCGTGTAGCAATTTCGGGTTCTGTTTTTGTTTTCGTTTCAGCAAAACCTCTATTCTTCTTCTTCTGATTGCTTCCATCACGCTATTTTTCGATTTTCGTTTTTCTCTTTTTCGGTTTCCGATCTGAACTCTATTCGATTCACCATTGCCGGAAAATGAGCCCTCCGACGAGTGTCCGGTGATGATCGCTCACGTGAGAGGTTCTTCTTCTTCTTCTTCTTCTTCTTCAATGTCATGGTTTCCTTCCGAGGTATTCGTTTTCCTTTTTTATTTTGTTTTGTTTTGGTTTATTTTATTTGTTCTGTTTGGTTTCCGAGAAAATTGAACCGGACTGCTGCGAACGGATTTACCTCATCTGGATTTGGATGTAACAGGTGCTGTCAGTACTCTCAGCGCGACGCTGTTGAGTTGAATTTCGATGGTTTTGAGTTGCTTTGTGATTATATTTTCTCGGCAACCAAACAGGAGGAATCGAAATTTGCAGTGATTAGTAAAGTATTTGTGAAAGTGAAGATAGAAATAGTTGTTATTGATGATGTTGTGATTTTCTTTTTGTTTCTATACTAATTGTAGTTTCCCTCTCTTCGCGTTTGAAAGGTTTTGGCGCTGTCGAGTTCGTTTTGGTGAGGATTCTGATTAAGTAAATTTTCTTTTATTCATTCAGAGCAGAAGCGTCTCTCTCGCTGTCTCTCTATATCTATCACTCTCTCCCCCTCGGGTGATACTTGAAATTTGTTGAATATTTTTTCTTTCTTCATCTTCTATGTAGTACTATTTTACGTGTGACATTTGAATTGGAGTGCTTATTCCATCTTATACAAAACAGAGACGGATCTCTTCCTATTATTCTCGCTTTGTTTCTTTTGCAGTAACATCACCACAATACCTTCTTCAGAGTCTGCTCACTTTCACCACAACGGCTTTACTCTTTACTGTTTTTCGTGTTACAAAAAATGAAAGGCGCTATTCCCTGTATCCACTCCTTGTCAGGGAAGATCTGAAGCAGCGGTAGCTGCTCACGTCCTGTAA


Gene Sequence:
>Vu_36759(+)
ATGGACGCGTACTCCTCTGGAGAAGAAGTAGTTGTAAAGGTAGGAGTTATCTTGATATATGTGGAAGTTTCTTGTGTACGGGAAAGTTTGGTATTGTGGTCTGAGTACTTAACTGCCTTTTGTAGACGAGAAAACCGTATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAGCTGCACGGGCGAGCATGGCAGCGCATAGAAGGTGATTGTCTGTTTATCATGTTTGCCTCAATATCTTCCTTCCTTCTTCCTTTCTAAAGATTAGTGAAAATGGCATGAAACGGTCTCCATATTTGATTTAATCTTGACTGGAGCTTTCTTTTTCTTTCTTCCATGACTTGTTCCCCTCTTGGTGTTTCACTTCTGCTATACAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAGAAGTTTTTCACAAAGGTCAATGGATACCTTCTCACTTTTCTTTATCAATCACATCGCTTACTCTCCAATCGAATAGAACTCCTAAATGAAGAAATTCATAACAAAATTGACACTAGAACATCTCTAGAGCTTGGATTGATTTAA