Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_36829	LG11	29619169	29621508	PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of gene expression, response to hypoxia, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to hypoxia, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

No SNPs found.

Sequence Details:

Protein Sequence:
>Vu_36829.1

MCGGAIISDFIPAGPAGRSRRVTPEILWPNLRKRFSKPLLDDDFEAGFREFKDDSEIEDDDDEDEEDSLMVVGVKKSVGFSRPNKTSKSLSRGSTTVKSGESKGQIEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAVSSKRLKVIPEESLSSVQPKMNHLFNFGDNLEDYYSPVDQVEQKPLVNQYVNPGPFTGNCVQLSPVTQSADVTAYFSSEHSSNSFDYSDLGWGEQVPRTPEISSILSAPLEGESQIQKKDSEDMMPVQDDSAKTLSEELADIESQLKFFEAPLFDGSWGDASLASLLGSDATQDAGNPLNLWSFDDLPSMAGVF*

CDS Sequence:
>Vu_36829.1

Promoter Sequence:
>Vu_36829::LG11:29617169-29619169(+)

TAATTGTGATCTTAACTCAATTCATATCAAATATATGTTTCATTAATAACTATTACCATACTCATTACTACAACATCAAAATCAATCACATTAGTTGAAGAATTGAACTAAATAATTACTTAGATTATAAAAGTAAAGATAGGTTGTTTTAGTGACTTATTTTAAAACATAAAAATATGTTATTAAAACTTCCTTGCTCAATTTGTATGGTTTTGCTTAAGTAATAACTTGTATTTTGAATGTCTTGTCAAAACTTGAATAATAATCGAAATTAAAACAAAACTTGTTCTTAGATTTTTCTTTGATTAGCTACTCAAATTATCATATGTGACATGCAATATATGTTATCGTTTGAGTGGAGAAATAATATTTAAACAATATATAATTGTGTAACTTAAGAAAACAAAAATTAAAGATATATCCAAACATATAAAACTTTATTATTTGAGAGATCAATGATAATTTTTTGTATTCAAGATTGAAACCCTTATACTTAAGTGTTGCTCGAGTGAAAACTCGATGCTCAAGTGAAATATAAAAGATAGTAAATTTGTATGAAGTTCCAATTAAGCAAAACTAATTTTGAATAATTCAATCGTCTTAAAAAGCTTAAAATACATTTTAATAGTTTGAAAAAAACTACAAATTACCCAAAACAGTGTTAACTATATTCATTTTATCGTTCTAAACCACTGTCAAATTAAAAAAATCAACATAAATATCAATTTCATTTCAATACACAACTCATCAATCATTATTGTCAGAAAAAAATTTAAAAAGATTAAAAACAAAGGACAATAAAACTGAGACCCAATGACTTGAGAAGGAAAAGTATTACAAGTTTCTATTTTTAAATATTTTTACATGCATATTCGGATATTGTTCTATTTGAGACATTAATGAACAACTTTTTAAGGAAAGTTTCAGTTGTAGTTGATGAAGTCTCTTCTTGTTTATTTTTGTATCCTTTTAATGATGTATATACGTTTTTTTGTTTTGTTTTAACTTAAAGCACAATCTACAATTTTAAACCATGTTATTATTACAAAGATATGTATAATTATCAATGACCAACTGAAAGTATCTAAAAAATTCACAAGATTGTCAACGGAGAATTAAAGAATAATACTATTTCTAATCAATTTACTTTCATAAAAATGTACATTTTATGGTTTACAGCCTTGTAATAAAAACACTAATTAAAAACTATCTGGTCGTTGAAATTTAAATATCATAAATAACTATGTTCAAATATTATTTCATTTTGTCATCACGAAGGTCTACGTGGTCATAAACATTTACAAGTACTATTATTCATCTTCACTTTCAACTTCAATTTCTTTTTTATTAATTTTAATATGATTAGCTATTTTGTATTTTCAATGAGTGAAATTTGTGACAGCATAAGTTGCCTTAAACCTAAAATCCACACAAAATAATATCTCTTCTATATCACGAGAAATCTCTACGTCACTCACCAAACATTTTCTTATGCCAAGCCATGCATTGTACACACGTAACTGCTAATTATTCACAACAAAGAAAAGTATCCAACAACATATAATCATGCGTAATGTATTTATGTTTTATACTTTACAATTTTCTTATTTTCATCGTTGTCTAATGTAATAAACTGCAAAAGTAACTTGTGTTTGGCACGTGTGTGATCTACTCGCATGATCAATGCTGACAGCACTGCCAGTAAAAACATCAACCTTACCGTTTACCTTTCCAAACAAGAAACCTCACCGGTTGCCACTGTCAGGGGTAAAACGGTAAGACTGCCCTCATCTCAGAAAAAAAAAAATCATTTTTTGTGTATATATACTACTATACAGCTCCCACCTCCCACCAAACTCAATTATACAAAACCCTGAAGAAAGACACAACAACCATTGTTACTTTCCATTGATTGAGCTAAAGCTTTGGCTTTTCTCGGATAATTTTTCATTGGGTACAAGAAAGTCTCTAACTTTCACCGAAAGAGCAAGGATCTGAGA

Gene Sequence:

>Vu_36829(+)

ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCCGCCGGCCGGTCCCGACGCGTGACCCCCGAAATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCGGGGTTCAGGGAATTCAAGGATGACTCTGAAATCGAGGATGATGATGATGAGGATGAAGAGGACAGTTTGATGGTGGTTGGTGTGAAGAAGTCCGTTGGCTTTTCTCGCCCCAACAAGACCTCTAAGTCTCTCTCTCGTGGTAACTTTACTTTCTGATGATCATCCTTTGAGTTTTAGTTGTGTTTTTCTGTTGTTTTGTTTTGGTTTTTTAATCTGGAGTTGTGGTTTCGGTTTTACATGCATTCCTTGCTTCGACGCTTTGGTTTCTTATTGTTGTTGAGTGATGGAAAAGTTATTACTTTTTCATGCTTGTGCCGTTTTTTAAACAAAAAACTGTCGAAGATATTGACTTTTTTCTTACAGAGAAATGCTTTTGATGTAAGGTTTTCTGGGATGTTAATTTTTGTTTTGTTTTTATTCTTCTGGAAGTTCTGTTTTTGGAGTTGGCACGGCAGAGGGGATTTTATTGAAATCGTTGTGGATCTTGTGAGCGTTGAAGAGATTTATTTGCTATATGAAATTTATTTGTAAAAATAAATGGAACATCTTTTGTGATCATTTTGGGGCTTGTTATGTCTATGCACTGTGGATGAAATTTGGGGATTACATTAATTGACTACAGAGCCGTATGTATCGGGGCATGATTTTGTAGATCCAATTAAAGTTGGTTTCGGTTGCTTGTTTAATCATCTCAAGCAAAGTTGCAATTTCTTTAGTACTCCTGATGATTTGTGGTGAAGTTGAATTTTGTACTCCACCTTATTTCAAAACTTTTATGAGTTGGGTATTTATTTGTCTTTTAGGACTTTTTTCTTCTGGATATAAAAAATATAGGAACAGTGTTCTTTCCATTGGTTTTGGCTGGGTGTTAGAAGCATAGCTCACGATCATTGACTGGATCAGTTCAGGAATTCAGTTGCATGTGCCTTTGGGATTGATTTTTGTGTTTGAAAATTATGCTTTAAATTCAACTATGCTTCTTTGTGGGCACAATCAACAAGACAGGGTTGACCCTGTTCATTAATTGTTCATTAGTTGATCCAATTTTGGCATTTCGTTTAGTATTGCTTTGGTTATTGGTCTGCTAGGTGGTTTACTGTTTGTGGGCTAAACAATGTTTGCTTGATTTAGATTTCTCGCTGGTTAATCCATGAAATTGAAACGATTGTTACATTGTTATTACAAGCTGTGAATGTTTCTTCATAATACTGATTTTCCTTTTACCTTGTGGTGTTGTCTGATAGATCTGAATTGTTTTGTTTATCTGTGTTTTTGGTATGTGATAAATTATTTTAATGATACTCCATATATATTGTTTCTACGCGATTATTTATGTTATTTCTTATTTTTATTGAAGGATCAACAACTGTAAAATCTGGGGAATCAAAAGGGCAAATTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGTCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGTTTCTTCAAAACGCCTCAAGGTGATTCCAGAGGAAAGCCTGAGCTCTGTGCAGCCAAAAATGAACCACTTGTTCAACTTTGGTGACAATCTGGAGGACTACTACAGCCCTGTGGATCAGGTGGAACAGAAGCCATTGGTTAACCAGTATGTGAACCCTGGTCCATTCACTGGAAACTGTGTTCAGCTCTCACCAGTTACTCAATCTGCTGATGTTACTGCTTATTTCAGTTCTGAGCATTCGAGCAATTCATTTGATTACTCTGATCTTGGATGGGGTGAACAAGTTCCAAGGACCCCTGAAATCTCCTCCATTCTTTCTGCTCCTCTGGAGGGTGAATCTCAGATTCAGAAGAAAGACAGTGAAGACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATAGAATCCCAGCTGAAGTTCTTCGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGATGCTTCATTGGCTTCTCTGCTAGGCAGTGATGCAACTCAGGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGACCTGCCATCAATGGCAGGCGTTTTCTGA