Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_37083 LG11 32403688 32406813 PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   DNA methylation, DNA methylation-dependent heterochromatin assembly, DNA methylation, DNA methylation-dependent heterochromatin assembly, gene silencing by RNA, DNA methylation-dependent heterochromatin assembly, DNA methylation-dependent heterochromatin assembly, gene silencing by RNA, DNA methylation, DNA methylation-dependent heterochromatin assembly
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   chromatin binding
SNP Position Effect Amino acid change
T/C 32403693 synonymous_variant p.Asp2Asp
T/A 32403787 downstream_gene_variant
C/T 32403792 downstream_gene_variant
G/A 32403799 downstream_gene_variant
G/A 32403927 missense_variant&splice_region_variant p.Gly47Ser
T/A 32404005 downstream_gene_variant
T/C 32404107 downstream_gene_variant
C/T 32404219 missense_variant p.Pro85Ser
A/G 32404281 downstream_gene_variant
C/T 32404330 downstream_gene_variant
C/A 32404338 downstream_gene_variant
T/C 32404366 downstream_gene_variant
G/A 32404468 downstream_gene_variant
T/C 32404502 downstream_gene_variant
C/T 32404509 downstream_gene_variant
C/A 32404552 downstream_gene_variant
T/C 32404581 downstream_gene_variant
G/A 32404621 downstream_gene_variant
G/A 32404728 splice_region_variant&intron_variant
C/G 32404835 downstream_gene_variant
C/T 32404849 downstream_gene_variant
A/G 32404875 downstream_gene_variant
T/G 32404903 downstream_gene_variant
T/A 32405039 downstream_gene_variant
G/A 32405043 downstream_gene_variant
A/T 32405145 downstream_gene_variant
G/A 32405160 downstream_gene_variant
G/T 32405174 downstream_gene_variant
C/T 32405184 downstream_gene_variant
C/G 32405214 downstream_gene_variant
T/C 32405242 downstream_gene_variant
T/C 32405255 downstream_gene_variant
T/C 32405276 downstream_gene_variant
G/A 32405352 downstream_gene_variant
T/A 32405354 downstream_gene_variant
T/G 32405358 downstream_gene_variant
G/A 32405508 downstream_gene_variant
T/C 32405517 downstream_gene_variant
A/C 32405526 downstream_gene_variant
T/C 32405529 downstream_gene_variant
G/A 32405562 downstream_gene_variant
T/G 32405617 downstream_gene_variant
G/A 32405625 downstream_gene_variant
G/A 32405676 downstream_gene_variant
C/T 32405698 downstream_gene_variant
C/A 32405805 synonymous_variant p.Arg133Arg
G/A,T 32405942 splice_region_variant&intron_variant
T/C 32405949 downstream_gene_variant
A/G 32406001 downstream_gene_variant
C/T 32406245 downstream_gene_variant
G/T 32406295 downstream_gene_variant
G/C 32406336 downstream_gene_variant
A/G 32406340 downstream_gene_variant
C/T 32406383 downstream_gene_variant
A/G 32406387 downstream_gene_variant
T/C 32406393 downstream_gene_variant
A/G 32406396 downstream_gene_variant
A/G 32406413 downstream_gene_variant
G/A 32406420 downstream_gene_variant
G/A 32406427 downstream_gene_variant
A/C 32406441 downstream_gene_variant
T/C 32406608 downstream_gene_variant
A/G 32406762 synonymous_variant p.Gln245Gln
A/G 32406763 missense_variant p.Ser246Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_37083.1
MDTSTLTEQPFLKLSSDEMLELERIYKDMGEKPIDWKLCQEIARRFGSLSNAAGKTSLSWQQVEQWFKNRQRVSQNKDSSSPNLVPLSAGLSSSKATDISDLAFEARSTKDVAWHDVALFLNYRVMCSGELEVRVRYAGFSKEQDEWVNVKQGVRERSIPLAPSECQKLQDGNLILCFLERDDYALYCDARIVKIQRRVHDPTECTCTFIIRYLHDQTEEEVSWNRLCCRPTEEESAVYPILAIDPTQSPSPSFSLNPIESLWG*


CDS Sequence:
>Vu_37083.1
ATGGATACTTCAACATTAACTGAACAACCATTTCTGAAGCTCTCTTCAGATGAGATGTTGGAATTGGAAAGAATATACAAAGATATGGGAGAAAAACCAATTGATTGGAAGTTGTGTCAGGAGATTGCTAGACGATTTGGTTCCTTGTCAAATGCTGCCGGTAAAACTTCCTTATCATGGCAACAGGTGGAGCAGTGGTTCAAAAATAGGCAGAGAGTATCACAGAATAAAGATAGTTCATCACCCAACCTGGTGCCACTTTCTGCAGGTCTTTCAAGTTCAAAAGCTACAGATATATCGGACTTGGCATTTGAAGCAAGATCTACAAAAGATGTTGCATGGCATGATGTTGCACTGTTCCTTAACTACAGAGTTATGTGCTCAGGCGAACTTGAAGTCCGTGTCCGATATGCTGGATTTAGTAAAGAGCAGGATGAGTGGGTGAATGTGAAACAGGGGGTGCGTGAGAGATCTATACCATTAGCTCCTTCAGAATGTCAAAAGCTTCAGGATGGAAATCTTATACTATGTTTCTTGGAAAGAGACGATTATGCTCTCTATTGTGATGCTCGAATTGTGAAAATCCAGAGGAGGGTGCATGATCCAACAGAGTGTACATGCACCTTCATTATTCGATATCTCCATGACCAGACTGAGGAAGAAGTTTCTTGGAACAGGTTATGCTGTAGGCCTACAGAAGAAGAATCTGCTGTCTACCCAATTCTTGCCATTGATCCCACCCAAAGTCCTTCTCCTAGTTTCTCCCTAAATCCCATAGAGTCCTTGTGGGGATAA


Promoter Sequence:
>Vu_37083::LG11:32401688-32403688(+)
ATTGTATTTTGCTCTTACACTTTTGAAGTTTTGGAAATCTATGAAATTGCATTTGGGGTTCTGTTTCTGAAATAAAGTTTTAATGGTGGATTGCTTCTAACCTAATTGTAATTTCTTTTAACTTTAACTTTTCCACATCAATAACTTCAACTTTTAATATTTACATGTCAATTGACAAAAGGTTGCCACGAAATAAATAACTGGACCGATCATTCATTATTGGATAAGGTAGACATTATAAGACCGTAAAAATGATCAACTTGAACAATTTTTACAAGAATATAAGATCACTTTAAACAACTTAAAATTACTTTAATCACAATTAACAAAACTAAAAACCAAAATTAGTATTAAACCTTGATTTTCTTTTCTTTTCTTTTTTTCTATTACTTATAAATGAAAATGTTTTGATGTTTTGCGGACGACCTAGTGGTAAGTGGCAACGTTACCTAGGTGTAGAAGAGGGTGTCCAGGCGGAAGAAGATAAGAGTTGGAATTTTTAGGTATTTTTGAGGAAAAAAGATGGGCTGGGTCCAGCAGGTACTCCTACACCCTAATATAGCTTCTCATACCTTCATTCTGCATAACTCTGGCATTTCCTGTTTTCATTTATGCACAGTTGATGTTTATTTTACTGTTTCAATTACATCCTGCACTCTCCAATAGTACCAATCCATAATCTCTTAACAGTGCAATAAGTTGAATATTTAACTTTGAAATTTTAATAAGTAATTCTGTGCAAATAGTGTACATTCTAAGAACAATAATTGTATAAATATATCTTTGAAATTAATTACAAAACTACCATATAATATTTCCAGTGCATATTCAAATATTACTTACTCACTTATTTTTAATCAATATTTTATATATTATTACATTTAAGTCTTTCAATATAAATAGTTCTAAAATCTACCTACTTTTACTTCTTCCTTTACTCCATTATTCTCATTTACATATTAATTATAAAATTCTAAATACATTATACAGTTTGATATTTTTTAAATTATTAAATTAAAACTATTGTATGAAAAAATTAACTATTTTTCTAACCTAAAATTATCATGAGCCAGTAATTATAAATTTTATGACATAATAATGATATTTTGTATTGTATATGGGGAAAATGATGATTATCAAAATGACAAAAGTATGTTCTTTTAAAATAATAAGTAAGTCTACAAATTATTTTAAAATTTAAAAATAAACATAAAAGTATTTTAAAATTCAAGAAAACACTATTTTAGCTATAGTTTTCTTTACTGTGTCTCTTTCATTTAGCTCTGCTTATATTATATAAAGGTGCTTCTTCCCTTGATTTATTTTTTTATCTTTGTATCCACAATTTCATTCAGTTCATGTTCAACGTGCTAATTTTTTTTTAATTTGTTAATACCATCTTAGAAACAGGACTAATGATAATTTTGATTGGTTACCAAATATTGAGAGAAATTCAATTTTTATAACTTCTTTTTCTTCAAGATAATCATGCAGACATCAAAATACTCGGCCATCCATTGAAACAGGGAAATTGTGTTCTGCATTTTACTTCCATCTTTCACTGTTAGATACAAAAACTTGTGCACTCAGCCGAAAAGGTTAGGAATCCCTTTGCTTCCAACACTCTCGTCTGATATTGCTGCTGAGTATGATTACATAAATTAATCAGTTCAATGTTTTAGGGTTTAGTAAAATATTGTCTTTGATTGGGGTTTAGCCTTGTACGATGATATTAGGTTGTAAATTTTGAATGTAGGACTATTGTTATCTGCCTGTTTGTCTTATCATGATTTGCTTGTTTGTTTTGCTGTCTGCATTTGAATGGACTCAATCTATTTTTACACGCTAGTGTTTTACTTCTTAAATGTGTAATATATATGACAGGGATTTCAAACAAAAGGTGTGTTGAGACTTTAGGGCAAGCCAAAGAGAAAGGAGAATTTGTTCTTAGTTTGGCTATTCACCTTTCTCTGGGCAAATTTTTGTTTTCTCTGCAAAGA


Gene Sequence:
>Vu_37083(+)
ATGGATACTTCAACATTAACTGAACAACCATTTCTGAAGCTCTCTTCAGATGAGGTAATGACAATATATATCACTAAAATGTTCTGTGCTCTTTATTTGTGGGACACATTTGTTGGCTAATCCTTGCACTCTTTATGCTCTTCCTCCACTCCTAGATGTTGGAATTGGAAAGAATATACAAAGATATGGGAGAAAAACCAATTGATTGGAAGTTGTGTCAGGAGATTGCTAGACGATTTGGGTGAATTTTGTCATATCTTTAACATAATTAGGATTTTTTGTTTTGTTTGTAAATGATATTCCATAATTTGACTTCTTAATTTTGTAGTTCCTTGTCAAATGCTGCCGGTAAAACTTCCTTATCATGGCAACAGGTTGTCAAATAAATTTCTCCATCCTTTAGGCATATTTGTCAGTTATGCCAGAGTGTTATAATGCTGTGTTGGTTTTATTGGATTTTAGGTGGAGCAGTGGTTCAAAAATAGGCAGAGAGTATCACAGAATAAAGATAGTTCATCACCCAACCTGGTGCCACTTTCTGCAGGTCTTTCAAGTTCAAAAGGTTATTCATCTTTTCCTTAGACTTTATCATGACTATAAATTTGTAAAAGGAAGAAAAAAATTCTCATAGATGGAATTAGGCAGTTTGTCCTCTGATTTTGAAATTTTGGTTCTCTATGGAAACCATTGGATGCACAGAGTTTGCCTGTCATTCACTCATTCAATGCATGTATTCTATATAGCTATATAATTGTTTTGTTTCCATTCTTCTCAAATAAAGACTTCAAAAATTCAGATATAGTTAATAATTTTGTTTTGTACGACTTTTACATTGGTTGTTTTGTCTATTTCTAGTTTAAATTCCTTGTATTATATGATATATGTGAAGTAATTTTTTATTGTACAATCTTGTGATTCACTATTTGAGTCCACGTTTGATAACCTTTGATAATTTGTGTTCTTAATCTTTGGCATACAAGCTACAGATATATCGGACTTGGCATTTGAAGCAAGATCTACAAAAGATGTTGCATGGTGAGGAATAATTAATTGATATAAGCTCTGTTTTCTGAGTTTAGCCATGAAATGGATTATATGAGAAGTATGAGGTGTGGTCTGATTTTATTTTATTTGTTTCTTTCCAATACGAAAAAGACTATCCCTAGATGCCATGTATACTCTGTAAAAGGGAAAGCCTTTATGATAGATATCCATTGGTAGTTAGTTAGTTAGGAGTCTGTTAGTGTCTTAGTGAGGAGTTAGTTACTTATATTAGCTGGGAAGGTTGAGATACTAGAACATATCCTTTTCTATATCCTTTTTTTTTTCTTAGTTTCTTACATACTTTCTGTCCAGCATCTTATTTTTTTTTTTTCAATTATAGGCATGATGTTGCACTGTTCCTTAACTACAGAGTTATGTGCTCAGGCGAACTTGTAAGATTCTGCTTTATTCTAATTTATGTGTTTTTGGTTGTGAAGAAACTGAGACATTATCTACAGAGTTTGTAATAAGAGAGGAATGACCGTTTCTTTCATGCCTGCCTCATTTTACTTAAAATAGTTATTTACATTTTCCTGCTTTATAATTATTTATAGACATATTCACGTATATGGAGAGTTGATGTCATGATACTTTTCTAGGTTTGTATATGCAACACAATGGTTGTATATGAAGTTTTTCTTCCCTTGCATCTTAAATTGTATGTTATTGTACAATATTGCAAGAAAATGAGTATAACTGCCATAAGTATAGTTAAGAAAAGTTCAAATCCCCATTCACATTGATTTAGTTCCTCTCAACTTTTGGGGTTTTATCAGGAAGTGATTTAGAAGATTATTTCAATTAAAGTAAAATGCTTCTTGAAAGTTAAAGTTTACTCTGTGCTTTTAATGAATACATAATGTAATCTATAGAACTATATATTAATAGGGATAGTTTCTTTTTCTTCATTAGGAAAGACCGAAAAAGTCAGAAAACTGTCTTGTGTATGTTGATAGTTTTATATACCTATGAACACTGTAAAATAACTTTACTTGCTTAGTGGATGCATATTTTTGATATTATGGAGAACCAAATAACGGATCTTGTCACGTACAATTTAGGAAGTCCGTGTCCGATATGCTGGATTTAGTAAAGAGCAGGATGAGTGGGTGAATGTGAAACAGGGGGTGCGTGAGAGATCTATACCATTAGCTCCTTCAGAATGTCAAAAGCTTCAGGATGGAAATCTTATACTATGTTTCTTGGTAAGGGAACACTGCATTCTTTTATTGTGTTTCAATTTATCTTTCCAATCACATGGTTAAATTTAGCACAAGACATTTTCAGGGTTCATTGATATGTATATATGTCTGTCTGTATCCATGTATAATGTATATATACATTATATAATATCACCAATTCAATCATTAACAAGAGTAAAACCATGAGAACTTATTAGATAAAAAATCAATAATAAAGAATCTTGTTTAAATTTGTAACTTTCTGTTTGAACTAGAGTAGGTTTTTGATCTGTTCTCCATTGATTATGAGATCAACCGGCACCAGTTTTATGCTTGAAGTCCAGTCTGCAAGTTCTTAATCTATGCATTTGACCCAAATAGAGCATTTATTTATTTAGCTTTTACTTTTTGTTGAAAGTTCCAGATCAACCAGAGATATAACCAATTTAGAATATATAGATAGATACAAACCTCATCTTATAAATTGATTTCGTGAAATTAAATTAGGCTTAAAGTTCACTTGTTAACACTCTTATTAGCCTTTTCTGTTTTTTCACAGGAAAGAGACGATTATGCTCTCTATTGTGATGCTCGAATTGTGAAAATCCAGAGGAGGGTGCATGATCCAACAGAGTGTACATGCACCTTCATTATTCGATATCTCCATGACCAGACTGAGGTGATCTTTGATTTCTTTTCTTCCCGTTCACTCCCTTTTGTGGATATTAACACTAACTAATGTGGTTTCATATGTCTTTGTCAGGAAGAAGTTTCTTGGAACAGGTTATGCTGTAGGCCTACAGAAGAAGAATCTGCTGTCTACCCAATTCTTGCCATTGATCCCACCCAAAGTCCTTCTCCTAGTTTCTCCCTAAATCCCATAGAGTCCTTGTGGGGATAA