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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_37171 LG11 33069294 33070259 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 33069348 missense_variant p.Met187Thr
A/G 33069426 missense_variant p.Leu161Pro
T/C 33069546 missense_variant p.Glu121Gly
T/A 33069909 intron_variant
C/G 33069971 intron_variant
A/T 33070005 intron_variant
A/T 33070011 intron_variant
C/G 33070091 intron_variant
G/A 33070226 stop_gained p.Gln12*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_37171.1
MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVLNHSTSSSSSSTSTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSEGDHDHDHDQDQDQDQGRSSDSEVPVVVVDHHAPEKIKPEEGNGLDEEQRMALQMIEELLNRN*


CDS Sequence:
>Vu_37171.1
ATGGTGCAATCAAGGAAATTCAGAGGTGTAAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGAAGGGTGTGGCTTGGGACATTCGAGACAGCCGAGGAAGCAGCAAGAGCATACGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAGGTTTTGAATCACAGCACTTCCTCTTCTTCATCTTCCACCTCTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAATCTCCCTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCATGATCATGATCATGATCAAGATCAAGATCAAGATCAAGGTCGTTCTTCTGATTCTGAAGTTCCTGTTGTTGTTGTTGATCATCATGCTCCAGAGAAGATAAAGCCTGAGGAAGGTAATGGATTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAGCTTCTGAATAGGAATTGA


Promoter Sequence:
>Vu_37171::LG11:33070259-33072259(-)
AATAACAGATCTGAAAAAATTGCCTAAGTGATTGACTGTGCTATATGCACAGTGTATTGTGTAATAGATCGAACAGTTGACCATCCAGCAATGAAACGACTGATAAACTGATCAGTTGGACTACAAACAAGATTAGCTATTGTAATTAGGTTAACCTTAAGTGAGATTATTAGTATATGGGCTGTAATTGAACCCGTCCTGGTCAGAAGTCCATTACGAAAGTCTATAAATACAGGTTTGATATTCAAGTAATTGACTACTTTTATTACTCATTTATTGTCAAATTATTCAGAACACTGACTTAAACGTCGGAGTGCTTTTACATATGACACCCGAACAGTCCAAGGAGAATTAAGAACCGAACTATGATCCAAGCTTGGAGTTAGAAGATAATTTATGTAAAAAGATTTATCGAAACACATAGCAATGATAGCATCCTTAAAATCTATACAATTATTGGCCAAGTACATATGCAAGCACCTAAATTTAACCAGATCTGAATAAAACTGAGTTTAAGATGAAGTTTTTTATGGAATCTATCCCAGTTAAATCTTATATAAGAAAAAGAGACATGTCATCCTTTAGCCTGAAGAGATGAAATGGTCCTCTTTGTACTGATAAACCAACTGCTGCTGAGTTTTGTGTTACTTATCTCCTTTTTGTATTCAAAATTACTGAATGATTTTGTATTTTTCATGAGATTTATTCAGTGTCAATTTGCAGTGTGGTGGTATAGAGAATAAAGGAATTTCCAGAGCAAGGACCAACGGTTGACACCTTCATGCAACTGACAGTCACTTCCAAATCATGCTGCTGCCAAAACTGAAAGCATTGTAGAAGGACAAGCACCATATATAGCAAAGCAAATTATAATGTCAGCCAACAGAAAATCATGCGCGGTATGAATTTTTTTAAGTTATAGTGTAAAAGTTAACAACCTAAGTGACAAATTATGACACTGGACCAGCGTAAAAACTTTACAGGGTTAGCTTATGTATGCATGTGTCCTTCTATATACGGTTTAAATACTTTCTTTTTTTCAATTTTTCCAAATGTCTTTTACAAACAACTGTGAAAAATGAGAATCTAAAACGTACAATATCTCACTTTTATTTAAGTTTACAGAGACTAATTTTAATTTTGAGTACAAATATATCTTCATTATATACTCATATTCCTTAAGAATAATATGCTCTTAAAGTTAAGCTTAAGTTATAGGTTGATAGTGACATCACAATCAATGAGCTAAGCATGTCATGGTTTGAAAATGAATGGTATTCAAGTTATTATATGTCAGTGGTCACTAACAGTCACAGTCACCAACATATGCCATTTACGTGCACGGTCCACTTGAGTAATAAGAGTGGAGAGAAGCATCTGAAAGTTCAGTCTGATCTTATCGTATTGTAAAGAAAACTGAAATGGCTATAACCAAATACAATAGCAGCTTCTGGTTTTAACCTTTTCATTTCCTATAATTGTATACTCTAAGTTGTATTATAATTATACGATGAGGACACTCGTGTCGGTAGAAGTTTCACCTCTAGATATAAGATCAATTTAAAATATATAAGTGAGTATAAACCTTACTTTATAAACTGATTTATTGGAGTTGAGTTAGACCTAAGTCTACCTATTATTGTATACTCATTTATGTCTAGTTTCACGCTTGATAAGTATAAATAAGTAAAATTTAAAATATATAGGTTGTTTTAGATTTTAAAACAAAAATGTAATGTATTGATATTGATGTATTTTTAATGTTGAACATACTATAAGACAAAACATGCAGTAAAAAGTGTAGCTGGTAAAATAATATGATCTTCTGGTTTAATTTAATTCTGTCTGTGGGGAAATCCTACCAAACCAAAATCACGTGTCCCTTTTGTGGAATGTAGCCTTGAATTACTGCATCATCACCCTGTGCTTTATAACTCGCCATGTCTTTCACATTCTCTGTCACAAATTCCATATCCTTCTTTATCTCTCTCTCTCTCAAC


Gene Sequence:
>Vu_37171(-)
ATGGTGCAATCAAGGAAATTCAGAGGTGTAAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGTACTCTCATCAAACTCATCCATCTCACTAAGAATTTTCAATTATTTATTTCTTCCACTTCTCCAAAAGTATCGTTGTTTTTTCTCTTGTTTGTTTCCTTAATCATCATCATCCTTGTCCCTTAAGAGAGGTTTTAAATTGCAGCAAATGTTACAGACATGGTTTCTGTCAGAATCCATGACAATGCAAGAAACTGTCTCAATTGTAGGCACTACACGCTTGCACAGATTTCCATAAACTATCTGAATTAATTGAAATCGGTGGCATGAGAATCCGTGCATGTATTAATACATAACAGTGTGCATTGAATGTGAGAGTCTTATCAGTTTGCAATTTGTGGTGTTTGAATAGGAAAAGAAGGGTGTGGCTTGGGACATTCGAGACAGCCGAGGAAGCAGCAAGAGCATACGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAGGTTTTGAATCACAGCACTTCCTCTTCTTCATCTTCCACCTCTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAATCTCCCTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCATGATCATGATCATGATCAAGATCAAGATCAAGATCAAGGTCGTTCTTCTGATTCTGAAGTTCCTGTTGTTGTTGTTGATCATCATGCTCCAGAGAAGATAAAGCCTGAGGAAGGTAATGGATTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAGCTTCTGAATAGGAATTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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